RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 NACC1Q96RE7 527 aa15.3■□□□□ 0.04
LDLR-213ENST00000560502 MMTAG2Q9BU76 263 aaKnown RBP15.3■□□□□ 0.04
LDLR-213ENST00000560502 RPP25Q9BUL9 199 aaKnown RBP15.3■□□□□ 0.04
LDLR-213ENST00000560502 KBTBD4Q9NVX7 518 aa15.3■□□□□ 0.04
LDLR-213ENST00000560502 TMEM189-UBE2V1I3L0A0 370 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 PRKCBP05771 671 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 DCNP07585 359 aaKnown RBP15.29■□□□□ 0.04
LDLR-213ENST00000560502 GLULP15104 373 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 PLCG1P19174 1290 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 FGFR3P22607 806 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 RPA1P27694 616 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 NAMPTP43490 491 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 STARD6P59095 220 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 DPYDQ12882 1025 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 ELAVL2Q12926 359 aaKnown RBP15.29■□□□□ 0.04
LDLR-213ENST00000560502 PRPF4BQ13523 1007 aaKnown RBP15.29■□□□□ 0.04
LDLR-213ENST00000560502 MAPK6Q16659 721 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 PPM1LQ5SGD2 360 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 CNNM4Q6P4Q7 775 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 PDXDC1Q6P996 788 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 PADI6Q6TGC4 694 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.29■□□□□ 0.04
LDLR-213ENST00000560502 ERMP1Q7Z2K6 904 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 CEP57Q86XR8 500 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 ST13P5Q8NFI4 369 aaPredicted RBP15.29■□□□□ 0.04
LDLR-213ENST00000560502 PJA1Q8NG27 643 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 CCDC47Q96A33 483 aaKnown RBP15.29■□□□□ 0.04
LDLR-213ENST00000560502 DNAJC25Q9H1X3 360 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 MTRRQ9UBK8 725 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 USP20Q9Y2K6 914 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 SIT1Q9Y3P8 196 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 R4GN57 208 aa15.29■□□□□ 0.04
LDLR-213ENST00000560502 PP2D1A8MPX8 630 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 LMNAP02545 664 aaKnown RBP15.28■□□□□ 0.04
LDLR-213ENST00000560502 ID4P47928 161 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 GPC5P78333 572 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 CCDC173Q0VFZ6 552 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 RAB33AQ14088 237 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 MORC3Q14149 939 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 KCNB1Q14721 858 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 CD300LGQ6UXG3 332 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 RNF214Q8ND24 703 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 FGF13Q92913 245 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 PPP1R10Q96QC0 940 aaKnown RBP15.28■□□□□ 0.04
LDLR-213ENST00000560502 DDX23Q9BUQ8 820 aaKnown RBP15.28■□□□□ 0.04
LDLR-213ENST00000560502 PANK2Q9BZ23 570 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 FOXQ1Q9C009 403 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 CBX8Q9HC52 389 aa15.28■□□□□ 0.04
LDLR-213ENST00000560502 PDCD11Q14690 1871 aaKnown RBP15.28■□□□□ 0.04
LDLR-213ENST00000560502 CITO14578 2027 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 SMTNL1A8MU46 457 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 GOLGA6L19H0YKK7 550 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 IKBKBO14920 756 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 CCL16O15467 120 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 XYLBO75191 536 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 SP9P0CG40 484 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 IGFBP6P24592 240 aaPredicted RBP15.27■□□□□ 0.04
LDLR-213ENST00000560502 PPP1R2P41236 205 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 TPM4P67936 248 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 DPCR1Q3MIW9 517 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 DCAF4L1Q3SXM0 396 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 RSPO2Q6UXX9 243 aaPredicted RBP15.27■□□□□ 0.04
LDLR-213ENST00000560502 MTSS1LQ765P7 747 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 C1orf210Q8IVY1 113 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 MAML2Q8IZL2 1156 aaPredicted RBP15.27■□□□□ 0.04
LDLR-213ENST00000560502 DEPTORQ8TB45 409 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 ITFG1Q8TB96 612 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 SLC7A14Q8TBB6 771 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 ADPGKQ9BRR6 497 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 KIFC3Q9BVG8 833 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 MAN1B1Q9UKM7 699 aa15.27■□□□□ 0.04
LDLR-213ENST00000560502 ARHGEF35A5YM69 484 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 BECN2A8MW95 431 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 LRRN2O75325 713 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 PRR29P0C7W0 189 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 CDC25AP30304 524 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 OR1D2P34982 312 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 CCT6AP40227 531 aaKnown RBP15.26■□□□□ 0.03
LDLR-213ENST00000560502 AFMP43652 599 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 PPP2R5AQ15172 486 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 C11orf57Q6ZUT1 292 aaPredicted RBP15.26■□□□□ 0.03
LDLR-213ENST00000560502 SV2BQ7L1I2 683 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 RTL10Q7L3V2 364 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 NPAS3Q8IXF0 933 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 LARP4BQ92615 738 aaKnown RBP15.26■□□□□ 0.03
LDLR-213ENST00000560502 SHDQ96IW2 340 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 C7orf25Q9BPX7 421 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 HCFC1R1Q9NWW0 138 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 GDAQ9Y2T3 454 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 BACE2Q9Y5Z0 518 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 COL4A2P08572 1712 aa15.26■□□□□ 0.03
LDLR-213ENST00000560502 KANSL1LA0AUZ9 987 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 ERCC5P28715 1186 aaPredicted RBP15.25■□□□□ 0.03
LDLR-213ENST00000560502 EFNA5P52803 228 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 PRKCQQ04759 706 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 IQCB1Q15051 598 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 MLF2Q15773 248 aaPredicted RBP15.25■□□□□ 0.03
LDLR-213ENST00000560502 ECM1Q16610 540 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 UPP1Q16831 310 aa15.25■□□□□ 0.03
LDLR-213ENST00000560502 TMEM132AQ24JP5 1023 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms