RNA–Protein interactions for RNA: ENST00000560435.1

SPG11-222, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 413 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-222	ENST00000560435	CD2AP	Q9Y5K6	639 aa		4.04	□□□□□ -1.76
SPG11-222	ENST00000560435	CNTNAP2	Q9UHC6	1331 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	PRAMEF33	A0A0G2JMD5	474 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	PRAMEF10	O60809	474 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	NTN1	O95631	604 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	LATS1	O95835	1130 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	BMS1	Q14692	1282 aa	Known RBP	4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	ADRM1	Q16186	407 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	FAM153C	Q494X1	144 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	LCE1E	Q5T753	118 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	SLC9A4	Q6AI14	798 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	SUMO4	Q6EEV6	95 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	RAB11FIP1	Q6WKZ4	1283 aa	Predicted RBP	4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	LPIN2	Q92539	896 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	NINJ1	Q92982	152 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	FATE1	Q969F0	183 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	TMEM125	Q96AQ2	219 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	RGMA	Q96B86	450 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	HAPLN3	Q96S86	360 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	BHMT2	Q9H2M3	363 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	LDAH	Q9H6V9	325 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	GREM2	Q9H772	168 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	NRIP3	Q9NQ35	241 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	TBC1D30	Q9Y2I9	924 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	CCDC9	Q9Y3X0	531 aa	Known RBP	4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	ACTL7A	Q9Y615	435 aa		4.03	□□□□□ -1.76
SPG11-222	ENST00000560435	CDHR4	A6H8M9	788 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	FCER1A	P12319	257 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	MRPS9	P82933	396 aa	Known RBP	4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	CLNK	Q7Z7G1	428 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	NEK8	Q86SG6	692 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	TOR1AIP2	Q8NFQ8	470 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	SLC30A5	Q8TAD4	765 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	AUTS2	Q8WXX7	1259 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	MRFAP1L1	Q96HT8	127 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	TARS2	Q9BW92	718 aa	Known RBP	4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	GSTO2	Q9H4Y5	243 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	TOPORS	Q9NS56	1045 aa	Predicted RBP	4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	PADI4	Q9UM07	663 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	CACNA1I	Q9P0X4	2223 aa		4.02	□□□□□ -1.77
SPG11-222	ENST00000560435	WDR27	A2RRH5	827 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	ENDOD1	O94919	500 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	CHRM2	P08172	466 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	KCNA2	P16389	499 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	PCSK1	P29120	753 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	EPHB2	P29323	1055 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	RPS7	P62081	194 aa	Known RBP	4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	CCT2	P78371	535 aa	Known RBP	4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	PPP3CA	Q08209	521 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	C21orf62-AS1	Q17RA5	79 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	ATP13A4	Q4VNC1	1196 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	MUM1L1	Q5H9M0	696 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	TSHZ1	Q6ZSZ6	1077 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	TECPR1	Q7Z6L1	1165 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	RASAL3	Q86YV0	1011 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	MYCBPAP	Q8TBZ2	947 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	TBC1D15	Q8TC07	691 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	DENND1A	Q8TEH3	1009 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	ZNF580	Q9UK33	172 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	ST3GAL5	Q9UNP4	418 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	NEU2	Q9Y3R4	380 aa		4.01	□□□□□ -1.77
SPG11-222	ENST00000560435	GPR32	O75388	356 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	GATA3	P23771	443 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	CERS1	P27544	350 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	MTM1	Q13496	603 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	MUM1	Q2TAK8	710 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	ANO4	Q32M45	955 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	SLC44A4	Q53GD3	710 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	RUSC1-AS1	Q66K80	236 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	NIM1K	Q8IY84	436 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	CYFIP2	Q96F07	1278 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	FEZ1	Q99689	392 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	IFT122	Q9HBG6	1241 aa		4	□□□□□ -1.77
SPG11-222	ENST00000560435	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	TCRBV7S2A1N4T	A0A589	114 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435		E9PSI1	815 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	URI1	O94763	535 aa	Predicted RBP	3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	FPGS	Q05932	587 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	TMEM119	Q4V9L6	283 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	AWAT2	Q6E213	333 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	ZNF66	Q6ZN08	573 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	ACE2	Q9BYF1	805 aa	Predicted RBP	3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	DMRT3	Q9NQL9	472 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	SERGEF	Q9UGK8	458 aa		3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	RUVBL1	Q9Y265	456 aa	Known RBP	3.99	□□□□□ -1.77
SPG11-222	ENST00000560435	PPEF2	O14830	753 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	CD1A	P06126	327 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	MTHFD2	P13995	350 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	TKT	P29401	623 aa	Known RBP	3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	MCAM	P43121	646 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	SLC6A9	P48067	706 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	SESN3	P58005	492 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	NXPH1	P58417	271 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	ITIH3	Q06033	890 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	DYRK1A	Q13627	763 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	RAPGEF1	Q13905	1077 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	SEPT2	Q15019	361 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	SF3A1	Q15459	793 aa	Known RBP	3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	TKFC	Q3LXA3	575 aa		3.98	□□□□□ -1.77
SPG11-222	ENST00000560435	DACT2	Q5SW24	774 aa		3.98	□□□□□ -1.77

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