RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 IRF2BP1Q8IU81 584 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.95□□□□□ -0.82
LDLR-210ENST00000559340 COLGALT1Q8NBJ5 622 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 SLC35C1Q96A29 364 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 C18orf25Q96B23 403 aaPredicted RBP9.95□□□□□ -0.82
LDLR-210ENST00000559340 TIFAQ96CG3 184 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 FAXDC2Q96IV6 333 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 FAM81BQ96LP2 452 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 POP1Q99575 1024 aaKnown RBP9.95□□□□□ -0.82
LDLR-210ENST00000559340 C11orf84Q9BUA3 381 aaPredicted RBP9.95□□□□□ -0.82
LDLR-210ENST00000559340 PBX4Q9BYU1 374 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 MTMR12Q9C0I1 747 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 MMRN2Q9H8L6 949 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 LIMA1Q9UHB6 759 aaKnown RBP9.95□□□□□ -0.82
LDLR-210ENST00000559340 AGAP1Q9UPQ3 857 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 SSX2IPQ9Y2D8 614 aa9.95□□□□□ -0.82
LDLR-210ENST00000559340 ANO9A1A5B4 782 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 GTPBP10A4D1E9 387 aaKnown RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 LINC01553A4QN01 128 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 MEFVO15553 781 aaPredicted RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 CBFA2T2O43439 604 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 LPXNO60711 386 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 STAU1O95793 577 aaKnown RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 SERPINC1P01008 464 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 ITGB3P05106 788 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 CA3P07451 260 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 FAM163BP0C2L3 166 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 TRIM49P0CI25 452 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 TRIM49CP0CI26 452 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 ZNF18P17022 549 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 TRIM21P19474 475 aaKnown RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 DNAJB2P25686 324 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 POLR2BP30876 1174 aaKnown RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 CTNNB1P35222 781 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 PIK3CAP42336 1068 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 SLC11A1P49279 550 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 CLCNKBP51801 687 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 AFF1P51825 1210 aaKnown RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 DLG4P78352 724 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 MYL7Q01449 175 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 PLCB3Q01970 1234 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 UBE3AQ05086 875 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 NCOA4Q13772 614 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 NAB2Q15742 525 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 UVSSAQ2YD98 709 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 PPP2R2DQ66LE6 453 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 LMBRD2Q68DH5 695 aaPredicted RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 PDXDC1Q6P996 788 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 DSTYKQ6XUX3 929 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 GBP6Q6ZN66 633 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 LUZP1Q86V48 1076 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 C1orf127Q8N9H9 656 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 FBXL13Q8NEE6 735 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 APPL2Q8NEU8 664 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 OR5B17Q8NGF7 314 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 PLEKHO2Q8TD55 490 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 ZNF516Q92618 1163 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 IGSF21Q96ID5 467 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 HPDLQ96IR7 371 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 GUCD1Q96NT3 240 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 NKX2-4Q9H2Z4 354 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 NDST4Q9H3R1 872 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 TUBGCP4Q9UGJ1 667 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 ADAM28Q9UKQ2 775 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 DSEQ9UL01 958 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 PLAGL2Q9UPG8 496 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 PRG3Q9Y2Y8 225 aaPredicted RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 COQ4Q9Y3A0 265 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 MYO7AQ13402 2215 aa9.94□□□□□ -0.82
LDLR-210ENST00000559340 MTCL1Q9Y4B5 1905 aaKnown RBP9.94□□□□□ -0.82
LDLR-210ENST00000559340 SF3B1O75533 1304 aaKnown RBP eCLIP9.93□□□□□ -0.82
LDLR-210ENST00000559340 C5orf67F2Z3F1 127 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 HUS1O60921 280 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 HLA-DRAP01903 254 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 COPB1P53618 953 aaKnown RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 WNT7BP56706 349 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 LILRA4P59901 499 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 YWHAEP62258 255 aaKnown RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 TAP1Q03518 808 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 SOX4Q06945 474 aaPredicted RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 PPP3CAQ08209 521 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 KRT31Q15323 416 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 EPC2Q52LR7 807 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 HSP90AA4PQ58FG1 418 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 ZNF667Q5HYK9 610 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 C1orf220Q5T0J3 134 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 TDRD10Q5VZ19 366 aaKnown RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 SMYD5Q6GMV2 418 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 PDE12Q6L8Q7 609 aaKnown RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 C15orf39Q6ZRI6 1047 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 DPH6Q7L8W6 267 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 DDX53Q86TM3 631 aaKnown RBP9.93□□□□□ -0.82
LDLR-210ENST00000559340 METTL23Q86XA0 190 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 GPR65Q8IYL9 337 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 SLC39A11Q8N1S5 342 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 TTC39CQ8N584 583 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 EHBP1Q8NDI1 1231 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 FBXO22Q8NEZ5 403 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 SPATA18Q8TC71 538 aa9.93□□□□□ -0.82
LDLR-210ENST00000559340 COL25A1Q9BXS0 654 aaPredicted RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms