RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 KLF1Q13351 362 aaPredicted RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 NUGGCQ68CJ6 796 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 HIBCHQ6NVY1 386 aaPredicted RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 SRRM1Q8IYB3 904 aaKnown RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 C10orf88Q9H8K7 445 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 JPH1Q9HDC5 661 aaPredicted RBP13.71□□□□□ -0.21
LDLR-207ENST00000558013 ARHGAP28Q9P2N2 729 aa13.71□□□□□ -0.21
LDLR-207ENST00000558013 LRRIQ4A6NIV6 560 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 ITIH2P19823 946 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 E2F5Q15329 346 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 LACTB2Q53H82 288 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 TMEM63BQ5T3F8 832 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 ZFYVE27Q5T4F4 411 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 TRMT10CQ7L0Y3 403 aaKnown RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 TBC1D1Q86TI0 1168 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 CEP57Q86XR8 500 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 PARP9Q8IXQ6 854 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 TIPINQ9BVW5 301 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 ACTR5Q9H9F9 607 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 SAMD15Q9P1V8 674 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 FBXO40Q9UH90 709 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 AGO2Q9UKV8 859 aaKnown RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 ASAP2O43150 1006 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 PROSCO94903 275 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 CYP1A1P04798 512 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 CCND2P30279 289 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 DRP2Q13474 957 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 FASTKD3Q14CZ7 662 aaKnown RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 WDR44Q5JSH3 913 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 MFSD5Q6N075 450 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 ARMC9Q7Z3E5 817 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 OSBPL8Q9BZF1 889 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 KDM4CQ9H3R0 1056 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 NEU2Q9Y3R4 380 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 SNX3O60493 162 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 DGAT1O75907 488 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 CST3P01034 146 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 BRAFP15056 766 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 GNA15P30679 374 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 GBP1P32455 592 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 MCCD1P59942 119 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 NOMO3P69849 1222 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 CENPCQ03188 943 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 PTK6Q13882 451 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 TMEM132BQ14DG7 1078 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 PLCB4Q15147 1175 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 TRPM8Q7Z2W7 1104 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 TAB3Q8N5C8 712 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 AGBL3Q8NEM8 1001 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 ATL2Q8NHH9 583 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 TCP11Q8WWU5 503 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 ATP6V0A1Q93050 837 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 SGSM3Q96HU1 749 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 ZNF668Q96K58 619 aaPredicted RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 RUNDC3BQ96NL0 473 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 SLC9A2Q9UBY0 812 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 NAALADL1Q9UQQ1 740 aa13.7□□□□□ -0.22
LDLR-207ENST00000558013 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.7□□□□□ -0.22
LDLR-207ENST00000558013 TLR3O15455 904 aaKnown RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 EXTL3O43909 919 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 UBOX5O94941 541 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 SWT1Q5T5J6 900 aaKnown RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 GSTA5Q7RTV2 222 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 ANKS4BQ8N8V4 417 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 MTMR14Q8NCE2 650 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 SLCO2A1Q92959 643 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 IFT74Q96LB3 600 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 KIF9Q9HAQ2 790 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 ATP6V0A4Q9HBG4 840 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 RBAKQ9NYW8 714 aaPredicted RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 SAE1Q9UBE0 346 aaPredicted RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 PNMA3Q9UL41 463 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 LOXHD1Q8IVV2 1947 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 F8VP50 259 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 BANF1O75531 89 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 ATF7P17544 494 aaPredicted RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 GTF2H1P32780 548 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 TNFSF9P41273 254 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 POLGP54098 1239 aaPredicted RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 CUL2Q13617 745 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 EMC2Q15006 297 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 P3H1Q32P28 736 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 IZUMO3Q5VZ72 239 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 ABHD15Q6UXT9 468 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 TAOK1Q7L7X3 1001 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 A1CFQ9NQ94 594 aaKnown RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 ZNF214Q9UL59 606 aaPredicted RBP13.69□□□□□ -0.22
LDLR-207ENST00000558013 DNPEPQ9ULA0 475 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 TRIM33Q9UPN9 1127 aa13.69□□□□□ -0.22
LDLR-207ENST00000558013 ITGBL1O95965 494 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 GAS8O95995 478 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 PSAPP07602 524 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 CLTAP09496 248 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 GARTP22102 1010 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 GLRA2P23416 452 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 KCNJ2P63252 427 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 CNTN2Q02246 1040 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 XRCC4Q13426 336 aa13.68□□□□□ -0.22
LDLR-207ENST00000558013 PNMA8AQ86V59 439 aaPredicted RBP13.68□□□□□ -0.22
LDLR-207ENST00000558013 KIF2BQ8N4N8 673 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms