RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 TMC7Q7Z402 723 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 ADGRD2Q7Z7M1 963 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 CXorf38Q8TB03 319 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 TMC2Q8TDI7 906 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 CACTINQ8WUQ7 758 aaKnown RBP16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 ZNF516Q92618 1163 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 SYAP1Q96A49 352 aaPredicted RBP16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 ANKRD36BP1Q96IX9 119 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 RWDD2AQ9UIY3 292 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 NUB1Q9Y5A7 615 aa16.05■□□□□ 0.16
VIPAS39-210ENST00000557466 CDH23Q9H251 3354 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 SLC16A3O15427 465 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 TNNC2P02585 160 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 URODP06132 367 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 EPB41P11171 864 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 GLUD2P49448 558 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 AARSP49588 968 aaKnown RBP eCLIP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 VAMP7P51809 220 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 CLDN10P78369 228 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 ELAVL2Q12926 359 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 BFSP1Q12934 665 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 SMC1AQ14683 1233 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 PTPN14Q15678 1187 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 C1orf220Q5T0J3 134 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 FAM171A1Q5VUB5 890 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 PDE12Q6L8Q7 609 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 INTS8Q75QN2 995 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 CSGALNACT2Q8N6G5 542 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 MICAL1Q8TDZ2 1067 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 BORCS6Q96GS4 357 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 NSUN3Q9H649 340 aaKnown RBP16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 STK39Q9UEW8 545 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 SIX4Q9UIU6 781 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 ITGA11Q9UKX5 1188 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 STXBP5LQ9Y2K9 1186 aa16.04■□□□□ 0.16
VIPAS39-210ENST00000557466 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 HIDE1A8MVS5 230 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 C2CD2LO14523 706 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 SPTLC1O15269 473 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 TRIM49P0CI25 452 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 TRIM49CP0CI26 452 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 KRT13P13646 458 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 TKTP29401 623 aaKnown RBP16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 CA8P35219 290 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 DSG1Q02413 1049 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 DUOXA2Q1HG44 320 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 USP41Q3LFD5 358 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 TCEAL5Q5H9L2 206 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 RTP2Q5QGT7 225 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 SASS6Q6UVJ0 657 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 TRAPPC11Q7Z392 1133 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 SUSD3Q96L08 255 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 CEP63Q96MT8 703 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 NGRNQ9NPE2 291 aaKnown RBP16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 CHST7Q9NS84 486 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 DACH1Q9UI36 760 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 AGAP1Q9UPQ3 857 aa16.03■□□□□ 0.16
VIPAS39-210ENST00000557466 C2orf71A6NGG8 1288 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 TRAPPC3O43617 180 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 CXCL14O95715 111 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 KRT19P08727 400 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 FGFR3P22607 806 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 TAF6P49848 677 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 LILRA4P59901 499 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 NFKBIBQ15653 356 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 CCDC85BQ15834 202 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 STX1AQ16623 288 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 KIAA0319Q5VV43 1072 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 TDRD10Q5VZ19 366 aaKnown RBP16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 KIAA1841Q6NSI8 718 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 PRSS55Q6UWB4 352 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 C11orf57Q6ZUT1 292 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 CEP57Q86XR8 500 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 MRPL43Q8N983 215 aaKnown RBP16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 MAFAQ8NHW3 353 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 RIN2Q8WYP3 895 aaPredicted RBP16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 ZNF560Q96MR9 790 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 TTPALQ9BTX7 342 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 IRAK3Q9Y616 596 aa16.02■□□□□ 0.16
VIPAS39-210ENST00000557466 M0QZQ0 153 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 LILRB3O75022 631 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 C4BPAP04003 597 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 ERCC5P28715 1186 aaPredicted RBP16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 AP3M2P53677 418 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 MCCD1P59942 119 aaPredicted RBP16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 RBP5P82980 135 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 ENPEPQ07075 957 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 PPP3CAQ08209 521 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 HYAL1Q12794 435 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 BIRC3Q13489 604 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 BMS1Q14692 1282 aaKnown RBP16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 SV2CQ496J9 727 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 CCDC40Q4G0X9 1142 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 FILIP1Q7Z7B0 1213 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 USP37Q86T82 979 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 LRRC52Q8N7C0 313 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 PPM1EQ8WY54 764 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 PIK3R5Q8WYR1 880 aa16.01■□□□□ 0.15
VIPAS39-210ENST00000557466 SRRTQ9BXP5 876 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms