RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 CXCL14O95715 111 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 ITGB3P05106 788 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 URODP06132 367 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 POLR2BP30876 1174 aaKnown RBP18.9■□□□□ 0.62
SHMT2-225ENST00000556798 GTF2F1P35269 517 aaKnown RBP eCLIP18.9■□□□□ 0.62
SHMT2-225ENST00000556798 NLRP12P59046 1061 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 DLG4P78352 724 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 PTPN14Q15678 1187 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 RTP2Q5QGT7 225 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 TTI2Q6NXR4 508 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 CAVIN1Q6NZI2 390 aaKnown RBP18.9■□□□□ 0.62
SHMT2-225ENST00000556798 RBM23Q86U06 439 aaKnown RBP18.9■□□□□ 0.62
SHMT2-225ENST00000556798 CEP57Q86XR8 500 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 FAM186BQ8IYM0 893 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 CACTINQ8WUQ7 758 aaKnown RBP18.9■□□□□ 0.62
SHMT2-225ENST00000556798 ANKRD36BP1Q96IX9 119 aa18.9■□□□□ 0.62
SHMT2-225ENST00000556798 NGRNQ9NPE2 291 aaKnown RBP18.9■□□□□ 0.62
SHMT2-225ENST00000556798 ANO9A1A5B4 782 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 LRRIQ3A6PVS8 624 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 PIRO00625 290 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 PER2O15055 1255 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 TNNC2P02585 160 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 KRT19P08727 400 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 TKTP29401 623 aaKnown RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 PSMC2P35998 433 aaKnown RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 ELAVL2Q12926 359 aaKnown RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 USP41Q3LFD5 358 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 PDE12Q6L8Q7 609 aaKnown RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 KIAA1841Q6NSI8 718 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 ZC3H3Q8IXZ2 948 aaKnown RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 MRPL43Q8N983 215 aaKnown RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 PARD3BQ8TEW8 1205 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 RIN2Q8WYP3 895 aaPredicted RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 ZNF516Q92618 1163 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 DUSP9Q99956 384 aaKnown RBP18.89■□□□□ 0.61
SHMT2-225ENST00000556798 IGFLR1Q9H665 355 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 CHST7Q9NS84 486 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 STK39Q9UEW8 545 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 SIX4Q9UIU6 781 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 PRUNE2Q8WUY3 3088 aa18.89■□□□□ 0.61
SHMT2-225ENST00000556798 BICDL2A1A5D9 508 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 MAPK13O15264 365 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 SPTLC1O15269 473 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 TRIM49P0CI25 452 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 TRIM49CP0CI26 452 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 EPB41P11171 864 aaKnown RBP18.88■□□□□ 0.61
SHMT2-225ENST00000556798 NRIP1P48552 1158 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 FKBP3Q00688 224 aaKnown RBP18.88■□□□□ 0.61
SHMT2-225ENST00000556798 DSG1Q02413 1049 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 HYAL1Q12794 435 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 BMS1Q14692 1282 aaKnown RBP18.88■□□□□ 0.61
SHMT2-225ENST00000556798 SKIV2LQ15477 1246 aaKnown RBP18.88■□□□□ 0.61
SHMT2-225ENST00000556798 DUOXA2Q1HG44 320 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 KIAA0319Q5VV43 1072 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 PRSS55Q6UWB4 352 aaPredicted RBP18.88■□□□□ 0.61
SHMT2-225ENST00000556798 CSGALNACT2Q8N6G5 542 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 MLKLQ8NB16 471 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 CXorf38Q8TB03 319 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 TTPALQ9BTX7 342 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 TLE6Q9H808 572 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 MRPL17Q9NRX2 175 aaKnown RBP18.88■□□□□ 0.61
SHMT2-225ENST00000556798 ITGA11Q9UKX5 1188 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 AGAP1Q9UPQ3 857 aa18.88■□□□□ 0.61
SHMT2-225ENST00000556798 TRAPPC3O43617 180 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 LILRB3O75022 631 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 KRT13P13646 458 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 FGFR3P22607 806 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 VAMP7P51809 220 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 LILRA4P59901 499 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 BFSP1Q12934 665 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.87■□□□□ 0.61
SHMT2-225ENST00000556798 INTS8Q75QN2 995 aaKnown RBP18.87■□□□□ 0.61
SHMT2-225ENST00000556798 TRAPPC11Q7Z392 1133 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 PPP2R3CQ969Q6 453 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 SUSD3Q96L08 255 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 MKNK1Q9BUB5 465 aa18.87■□□□□ 0.61
SHMT2-225ENST00000556798 MTCL1Q9Y4B5 1905 aaKnown RBP18.87■□□□□ 0.61
SHMT2-225ENST00000556798 SLC16A3O15427 465 aaKnown RBP18.86■□□□□ 0.61
SHMT2-225ENST00000556798 CNPP09543 421 aaKnown RBP18.86■□□□□ 0.61
SHMT2-225ENST00000556798 RPL17P18621 184 aaKnown RBP18.86■□□□□ 0.61
SHMT2-225ENST00000556798 AARSP49588 968 aaKnown RBP eCLIP18.86■□□□□ 0.61
SHMT2-225ENST00000556798 TAF6P49848 677 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 RBM10P98175 930 aaKnown RBP18.86■□□□□ 0.61
SHMT2-225ENST00000556798 DUSP6Q16828 381 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 KLHL40Q2TBA0 621 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 C1orf220Q5T0J3 134 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 DSTYKQ6XUX3 929 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 GLYCTKQ8IVS8 523 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 TMC2Q8TDI7 906 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 BORCS6Q96GS4 357 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 ZNF560Q96MR9 790 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 MED15Q96RN5 788 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 MMRN2Q9H8L6 949 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 RWDD2AQ9UIY3 292 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 TIMM13Q9Y5L4 95 aaPredicted RBP18.86■□□□□ 0.61
SHMT2-225ENST00000556798 IRAK3Q9Y616 596 aa18.86■□□□□ 0.61
SHMT2-225ENST00000556798 LINC01565O15544 149 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 CLASP2O75122 1294 aaKnown RBP18.85■□□□□ 0.61
SHMT2-225ENST00000556798 PTMSP20962 102 aa18.85■□□□□ 0.61
SHMT2-225ENST00000556798 CLDN10P78369 228 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms