RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 AP3M2P53677 418 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 PLCB3Q01970 1234 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 ELAVL2Q12926 359 aaKnown RBP11.78□□□□□ -0.52
SHMT2-218ENST00000555213 NAB2Q15742 525 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 SPRED2Q7Z698 418 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 SPC24Q8NBT2 197 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 ANP32BQ92688 251 aaKnown RBP11.78□□□□□ -0.52
SHMT2-218ENST00000555213 C18orf25Q96B23 403 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-218ENST00000555213 CNOT6LQ96LI5 555 aaKnown RBP11.78□□□□□ -0.52
SHMT2-218ENST00000555213 CGRRF1Q99675 332 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 TUBGCP2Q9BSJ2 902 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 PRDM12Q9H4Q4 367 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 PDE11AQ9HCR9 933 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 ADAM28Q9UKQ2 775 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 NUB1Q9Y5A7 615 aa11.78□□□□□ -0.52
SHMT2-218ENST00000555213 NT5C1B-RDH14C9J2C7 533 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 TMEM189-UBE2V1I3L0A0 370 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 RNF225M0QZC1 329 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-218ENST00000555213 STX10O60499 249 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 LPXNO60711 386 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 KIF4AO95239 1232 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 GNA14O95837 355 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 ITGB1P05556 798 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 PAX3P23760 479 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 LRPAP1P30533 357 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 CLCNKBP51801 687 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 SOX4Q06945 474 aaPredicted RBP11.77□□□□□ -0.53
SHMT2-218ENST00000555213 ENPEPQ07075 957 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 ARID5BQ14865 1188 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 GRIN2CQ14957 1233 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 UPP1Q16831 310 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 DUOXA2Q1HG44 320 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 CCDC40Q4G0X9 1142 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 TIGD5Q53EQ6 642 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 DPY19L2P1Q6NXN4 242 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 DCLRE1AQ6PJP8 1040 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 Q7L0L9 218 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 CCDC186Q7Z3E2 898 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 DDX53Q86TM3 631 aaKnown RBP11.77□□□□□ -0.53
SHMT2-218ENST00000555213 TRIM59Q8IWR1 403 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 EFCAB13Q8IY85 973 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 TMC2Q8TDI7 906 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 PPP2R3CQ969Q6 453 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 MFSD14AQ96MC6 490 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 ZNF560Q96MR9 790 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 MTMR12Q9C0I1 747 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 CXCL16Q9H2A7 254 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 GOLGA2P5Q9HBQ8 144 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 METTL14Q9HCE5 456 aaKnown RBP11.77□□□□□ -0.53
SHMT2-218ENST00000555213 ALG13Q9NP73 1137 aaKnown RBP11.77□□□□□ -0.53
SHMT2-218ENST00000555213 ENTPD7Q9NQZ7 604 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 TLR9Q9NR96 1032 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 DPP3Q9NY33 737 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.77□□□□□ -0.53
SHMT2-218ENST00000555213 ITGA11Q9UKX5 1188 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 CITO14578 2027 aa11.77□□□□□ -0.53
SHMT2-218ENST00000555213 NLRC5Q86WI3 1866 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 TDRD15B5MCY1 1934 aaKnown RBP11.76□□□□□ -0.53
SHMT2-218ENST00000555213 ARHGEF37A1IGU5 675 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 EPOPA6NHQ4 379 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 CBFA2T2O43439 604 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 PHACTR2O75167 634 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 CLSTN1O94985 981 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 URODP06132 367 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 FOSL2P15408 326 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 PNPLA4P41247 253 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 VAMP7P51809 220 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 KCNMA1Q12791 1236 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 BFSP1Q12934 665 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 ZBTB6Q15916 424 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 VWA3BQ502W6 1294 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 PDE12Q6L8Q7 609 aaKnown RBP11.76□□□□□ -0.53
SHMT2-218ENST00000555213 KIAA1841Q6NSI8 718 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 FUT10Q6P4F1 479 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 FRMD5Q7Z6J6 570 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 TMEM173Q86WV6 379 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-218ENST00000555213 FAM114A1Q8IWE2 563 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 MICAL1Q8TDZ2 1067 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 POF1BQ8WVV4 589 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 MRPL38Q96DV4 380 aaKnown RBP11.76□□□□□ -0.53
SHMT2-218ENST00000555213 TCF25Q9BQ70 676 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 MARCH5Q9NX47 278 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 ARMCX3Q9UH62 379 aaPredicted RBP11.76□□□□□ -0.53
SHMT2-218ENST00000555213 SSX2IPQ9Y2D8 614 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 COL6A3P12111 3177 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 KIAA1671Q9BY89 1806 aa11.76□□□□□ -0.53
SHMT2-218ENST00000555213 COL4A4P53420 1690 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-218ENST00000555213 LGALS16A8MUM7 142 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 GRM6O15303 877 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 CSPG5O95196 566 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 SOD2P04179 222 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 KRT19P08727 400 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 IGFBP4P22692 258 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 CA8P35219 290 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 GLUD2P49448 558 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 GUCY2FP51841 1108 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 RBP5P82980 135 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 CREMQ03060 361 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 MYO1EQ12965 1108 aa11.75□□□□□ -0.53
SHMT2-218ENST00000555213 BIRC3Q13489 604 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms