RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 NPHP3-ACAD11A0A0J9YXS1 232 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 ARHGEF37A1IGU5 675 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 SHISA7A6NL88 538 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 LAD1O00515 517 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 ABLIM3O94929 683 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 SEC24AO95486 1093 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 RFX1P22670 979 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 NASPP49321 788 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 YARSP54577 528 aaKnown RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 ATP2C1P98194 919 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 SNW1Q13573 536 aaKnown RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 MRPL58Q14197 206 aaKnown RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 MLF2Q15773 248 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 SLC10A6Q3KNW5 377 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 RILPL1Q5EBL4 403 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 PRSS36Q5K4E3 855 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 MTSS1LQ765P7 747 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 APBB1IPQ7Z5R6 666 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 SYAP1Q96A49 352 aaPredicted RBP11.55□□□□□ -0.56
SHMT2-215ENST00000554656 TCEAL4Q96EI5 215 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 ACAP3Q96P50 834 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 PLIN2Q99541 437 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 RAB34Q9BZG1 259 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 TUBGCP4Q9UGJ1 667 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 KCNH3Q9ULD8 1083 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 STK24Q9Y6E0 443 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 F5P12259 2224 aa11.55□□□□□ -0.56
SHMT2-215ENST00000554656 CEP250Q9BV73 2442 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 TRAPPC3O43617 180 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 SP9P0CG40 484 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 CXCL8P10145 99 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 MAPTP10636 758 aaKnown RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 FCARP24071 287 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 CCR2P41597 374 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 SLC12A3P55017 1021 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 CACNB1Q02641 598 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 NOLC1Q14978 699 aaKnown RBP eCLIP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 ZRSR1Q15695 479 aaKnown RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 FOXD4L6Q3SYB3 417 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 TMEM119Q4V9L6 283 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 ARSHQ5FYA8 562 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 FAM173BQ6P4H8 233 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 FOXD4L3Q6VB84 417 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 DTHD1Q6ZMT9 781 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 RTL10Q7L3V2 364 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 ZNF461Q8TAF7 563 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 KCNG4Q8TDN1 519 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 SPIRE2Q8WWL2 714 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 MCRS1Q96EZ8 462 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 SUSD3Q96L08 255 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 USP28Q96RU2 1077 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 NTPCRQ9BSD7 190 aaKnown RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 C17orf75Q9HAS0 396 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 AVENQ9NQS1 362 aaPredicted RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 SLC38A7Q9NVC3 462 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 ANKFY1Q9P2R3 1169 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 FBXL5Q9UKA1 691 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 MRPS23Q9Y3D9 190 aaKnown RBP11.54□□□□□ -0.56
SHMT2-215ENST00000554656 NCANO14594 1321 aa11.54□□□□□ -0.56
SHMT2-215ENST00000554656 SCN1AP35498 2009 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 KANSL1LA0AUZ9 987 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 SYN3O14994 580 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 FAM189A1O60320 539 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 MOSPD3O75425 235 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 TOM1L1O75674 476 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 VNN2O95498 520 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 BMP15O95972 392 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 PLS3P13797 630 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 ATF2P15336 505 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 CD72P21854 359 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 RPL9P32969 192 aaKnown RBP11.53□□□□□ -0.56
SHMT2-215ENST00000554656 ARPP19P56211 112 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 SPAG1Q07617 926 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 MCL1Q07820 350 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 SLC44A4Q53GD3 710 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 ZBTB41Q5SVQ8 909 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 TANGO2Q6ICL3 276 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 C1orf210Q8IVY1 113 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 TCEAL8Q8IYN2 117 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 SYT2Q8N9I0 419 aaPredicted RBP11.53□□□□□ -0.56
SHMT2-215ENST00000554656 CHAMP1Q96JM3 812 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 TCHPQ9BT92 498 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 TIPINQ9BVW5 301 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 GDPD2Q9HCC8 539 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 INSL5Q9Y5Q6 135 aa11.53□□□□□ -0.56
SHMT2-215ENST00000554656 TTC26A0AVF1 554 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 VWA3AA6NCI4 1184 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 GOLGA6L4A6NEF3 574 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 PRRG1O14668 218 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 ECI2O75521 394 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 PLA2G4BP0C869 781 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 TARSP26639 723 aaKnown RBP11.52□□□□□ -0.57
SHMT2-215ENST00000554656 TNFSF9P41273 254 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 GUCY2FP51841 1108 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 NCKAP1LP55160 1127 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 SLC39A14Q15043 492 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 CTXN3Q4LDR2 81 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 ZPBP2Q6X784 338 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 HS6ST3Q8IZP7 471 aa11.52□□□□□ -0.57
SHMT2-215ENST00000554656 LINC00301Q8NCQ3 95 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms