RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 ALG3Q92685 438 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 NUP85Q9BW27 656 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 ALG6Q9Y672 507 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 GOLGA6BA6NDN3 693 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 IGF2BP3O00425 579 aaKnown RBP eCLIP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 WEE2P0C1S8 567 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 CLDN10P78369 228 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 GUCY2DQ02846 1103 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 KCTD16Q68DU8 428 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 FAM76AQ8TAV0 307 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 N4BP2L2Q92802 583 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-212ENST00000554467 CAPS2Q9BXY5 557 aa12.49□□□□□ -0.41
SHMT2-212ENST00000554467 H3BRB1 525 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 ABLIM1O14639 778 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GJB6O95452 261 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 LDHAP00338 332 aaKnown RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GNGT1P63211 74 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GCNT1Q02742 428 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 MBTD1Q05BQ5 628 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 ORC1Q13415 861 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 CUL2Q13617 745 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 CCNI2Q6ZMN8 369 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 PLEKHH3Q7Z736 793 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 CYFIP2Q96F07 1278 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 PARK7Q99497 189 aaKnown RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 SH3GL2Q99962 352 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 C16orf70Q9BSU1 422 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 FAM49AQ9H0Q0 323 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 TUT1Q9H6E5 874 aaKnown RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 IFT122Q9HBG6 1241 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GOLGA6CA6NDK9 693 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 DYNC1LI2O43237 492 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 HEXIM1O94992 359 aaKnown RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 FSBPO95073 299 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 FGGP02679 453 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 KRT19P08727 400 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GOLGA6DP0CG33 693 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 ZBTB48P10074 688 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GCLCP48506 637 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 ZNF157P51786 506 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GUCY2FP51841 1108 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 ACVR2BQ13705 512 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 CCL14Q16627 93 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 PREPLQ4J6C6 727 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 ZPBP2Q6X784 338 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 ZNF572Q7Z3I7 529 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-212ENST00000554467 BRSK2Q8IWQ3 736 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 OR6J1Q8NGC5 347 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 HES6Q96HZ4 224 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 TINF2Q9BSI4 451 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 EPB41L5Q9HCM4 733 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 VTA1Q9NP79 307 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 SETD4Q9NVD3 440 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GOLGA6AQ9NYA3 693 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 STIM2Q9P246 746 aa12.48□□□□□ -0.41
SHMT2-212ENST00000554467 GPR25O00155 361 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 KRIT1O00522 736 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 OGTO15294 1046 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 RAD51CO43502 376 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 CARSP49589 748 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 PTENP60484 403 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 FMNL3Q8IVF7 1028 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 SYCE1Q8N0S2 351 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 NLRP7Q8WX94 980 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 FLRT1Q9NZU1 646 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 MORF4L1Q9UBU8 362 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 NXF1Q9UBU9 619 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 ACKR2O00590 384 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 DDX3YO15523 660 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 TUBBP07437 444 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 ACO1P21399 889 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 IBSPP21815 317 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 COMTP21964 271 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 PPFIA1Q13136 1202 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 GRB14Q14449 540 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 C11orf91Q3C1V1 193 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 NAIF1Q69YI7 327 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 PPTC7Q8NI37 304 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 ZNF564Q8TBZ8 553 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 CDT1Q9H211 546 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 SLC24A3Q9HC58 644 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 CNOT8Q9UFF9 292 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 TARSL2A2RTX5 802 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 PGRMC1O00264 195 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 STRNO43815 780 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 CLTAP09496 248 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 RAP1GAPP47736 663 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 KIZQ2M2Z5 673 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 WLSQ5T9L3 541 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 MPZL3Q6UWV2 235 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 DDX42Q86XP3 938 aaKnown RBP eCLIP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 RBBP8NLQ8NC74 664 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 GIMAP7Q8NHV1 300 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 CELF4Q9BZC1 486 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 CPSF3Q9UKF6 684 aaKnown RBP12.47□□□□□ -0.41
SHMT2-212ENST00000554467 NFU1Q9UMS0 254 aa12.47□□□□□ -0.41
SHMT2-212ENST00000554467 THAP12O43422 761 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 MCM3P25205 808 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 ABCD1P33897 745 aa12.46□□□□□ -0.41
SHMT2-212ENST00000554467 MCCD1P59942 119 aaPredicted RBP12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms