RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 C9orf57Q5W0N0 161 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 ZNF365Q70YC5 407 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 CMTR2Q8IYT2 770 aaKnown RBP15.6■□□□□ 0.09
SHMT2-210ENST00000553950 CRIPAKQ8N1N5 446 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 GSTCDQ8NEC7 633 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 PHOSPHO2Q8TCD6 241 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 VWCEQ96DN2 955 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 PDLIM2Q96JY6 352 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 NIF3L1Q9GZT8 377 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 FAM207AQ9NSI2 230 aaPredicted RBP15.6■□□□□ 0.09
SHMT2-210ENST00000553950 AGAP1Q9UPQ3 857 aa15.6■□□□□ 0.09
SHMT2-210ENST00000553950 TSC2P49815 1807 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 ANO9A1A5B4 782 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 TMEM189-UBE2V1I3L0A0 370 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 NRDCO43847 1150 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 DGKIO75912 1065 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 VNN1O95497 513 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 POMCP01189 267 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 UCHL3P15374 230 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 MFAP3P55082 362 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 DSC1Q08554 894 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 KCNMA1Q12791 1236 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 TSR1Q2NL82 804 aaKnown RBP15.59■□□□□ 0.09
SHMT2-210ENST00000553950 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.59■□□□□ 0.094e-7■□□□□ 9.3
SHMT2-210ENST00000553950 OTOP2Q7RTS6 562 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 LMO3Q8TAP4 145 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 HPDLQ96IR7 371 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 SPAG5Q96R06 1193 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 TMEM175Q9BSA9 504 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 RNF19AQ9NV58 838 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 TBC1D13Q9NVG8 400 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 SIX4Q9UIU6 781 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 NLRC5Q86WI3 1866 aa15.59■□□□□ 0.09
SHMT2-210ENST00000553950 TBKBP1A7MCY6 615 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 PODXLO00592 558 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 CCDC172P0C7W6 258 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 SLC9A1P19634 815 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 MYL6P60660 151 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 ZBED6P86452 979 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 NAB2Q15742 525 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 KLHDC7AQ5VTJ3 777 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 PPM1KQ8N3J5 372 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 C18orf25Q96B23 403 aaPredicted RBP15.58■□□□□ 0.08
SHMT2-210ENST00000553950 CASD1Q96PB1 797 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 YME1L1Q96TA2 773 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.58■□□□□ 0.083e-9■□□□□ 10
SHMT2-210ENST00000553950 TTYH3Q9C0H2 523 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 GANQ9H2C0 597 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 PLAGL2Q9UPG8 496 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 LUC7L2Q9Y383 392 aaKnown RBP15.58■□□□□ 0.08
SHMT2-210ENST00000553950 SLC4A7Q9Y6M7 1214 aa15.58■□□□□ 0.08
SHMT2-210ENST00000553950 PIRO00625 290 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 MFAP3LO75121 409 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 GYPCP04921 128 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 PTMAP06454 111 aaKnown RBP15.57■□□□□ 0.08
SHMT2-210ENST00000553950 POLR2FP61218 127 aaKnown RBP15.57■□□□□ 0.08
SHMT2-210ENST00000553950 DEFB103AP81534 67 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 CUL2Q13617 745 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 CXorf38Q8TB03 319 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 SPATA18Q8TC71 538 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 SEMA4DQ92854 862 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 XYLT2Q9H1B5 865 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 CYP3A43Q9HB55 503 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 SIX2Q9NPC8 291 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 STK39Q9UEW8 545 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 CAPN11Q9UMQ6 739 aa15.57■□□□□ 0.08
SHMT2-210ENST00000553950 MKI67P46013 3256 aaKnown RBP15.57■□□□□ 0.08
SHMT2-210ENST00000553950 CASTOR2A6NHX0 329 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 AKR1B15C9JRZ8 316 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-210ENST00000553950 TRAPPC3O43617 180 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 UPP2O95045 317 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 GJB5O95377 273 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 LAG3P18627 525 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 KLK7P49862 253 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 GUCY2FP51841 1108 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 SOX4Q06945 474 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-210ENST00000553950 ELAVL2Q12926 359 aaKnown RBP15.56■□□□□ 0.08
SHMT2-210ENST00000553950 TBX2Q13207 712 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-210ENST00000553950 RAPGEF1Q13905 1077 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 UPP1Q16831 310 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 DPH6Q7L8W6 267 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 SPC24Q8NBT2 197 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 ZNF689Q96CS4 500 aaPredicted RBP15.56■□□□□ 0.08
SHMT2-210ENST00000553950 PPP1R9BQ96SB3 815 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 COLEC11Q9BWP8 271 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 STK33Q9BYT3 514 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 RC3H2Q9HBD1 1191 aaKnown RBP15.56■□□□□ 0.08
SHMT2-210ENST00000553950 AAASQ9NRG9 546 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 ZNHIT6Q9NWK9 470 aaKnown RBP15.56■□□□□ 0.08
SHMT2-210ENST00000553950 GDAP2Q9NXN4 497 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 DNAJC12Q9UKB3 198 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 INSL6Q9Y581 213 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 NUB1Q9Y5A7 615 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 FHOD1Q9Y613 1164 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 GBF1Q92538 1859 aa15.56■□□□□ 0.08
SHMT2-210ENST00000553950 KPNA7A9QM74 516 aa15.55■□□□□ 0.08
SHMT2-210ENST00000553950 CST3P01034 146 aaPredicted RBP15.55■□□□□ 0.08
SHMT2-210ENST00000553950 FAM163BP0C2L3 166 aa15.55■□□□□ 0.08
SHMT2-210ENST00000553950 ODC1P11926 461 aa15.55■□□□□ 0.08
SHMT2-210ENST00000553950 ATP2A2P16615 1042 aaKnown RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms