RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CYP4F22Q6NT55 531 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 HAUS6Q7Z4H7 955 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 C12orf56Q8IXR9 622 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 TMEM174Q8WUU8 243 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CPA5Q8WXQ8 436 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 CNKSR1Q969H4 720 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 IFT74Q96LB3 600 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ETNK1Q9HBU6 452 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 COL20A1Q9P218 1284 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ANAPC5Q9UJX4 755 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 ZBTB21Q9ULJ3 1066 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 USP20Q9Y2K6 914 aa5.77□□□□□ -1.49
LIMA1-212ENST00000552491 LOXHD1Q8IVV2 1947 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SORBS3O60504 671 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SMNDC1O75940 238 aaKnown RBP eCLIP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ASMTLO95671 621 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 POLR2MP0CAP2 368 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 FDX1P10109 184 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 UNGP13051 313 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PLS3P13797 630 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ATF2P15336 505 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TARSP26639 723 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 MAPK4P31152 587 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SSTR3P32745 418 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 STAT2P52630 851 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PEX3P56589 373 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SOX10P56693 466 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TAS2R40P59535 323 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 GTF2BQ00403 316 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TMED2Q15363 201 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 UGCGQ16739 394 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 CLEC16AQ2KHT3 1053 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 NAIF1Q69YI7 327 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SLC39A4Q6P5W5 647 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 DENND1AQ8TEH3 1009 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PARD3BQ8TEW8 1205 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 POMGNT1Q8WZA1 660 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ERP27Q96DN0 273 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 NGLY1Q96IV0 654 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ACCSQ96QU6 501 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PAIP2Q9BPZ3 127 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 FAM167BQ9BTA0 163 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TRAIPQ9BWF2 469 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TEKT3Q9BXF9 490 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 MOV10L1Q9BXT6 1211 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 WDR11Q9BZH6 1224 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TRIM6Q9C030 488 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TDRD3Q9H7E2 651 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TMEM206Q9H813 350 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 FBXO28Q9NVF7 368 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 KLHL14Q9P2G3 628 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 LARSQ9P2J5 1176 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 HAO1Q9UJM8 370 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 UMODL1Q5DID0 1318 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 MYPNQ86TC9 1320 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 RASA4BC9J798 803 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PMM2O15305 246 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 RASA4O43374 803 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 GFRA3O60609 400 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PEX11AO75192 247 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 CDH16O75309 829 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ZSCAN5DPP0CG00 497 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ETS1P14921 441 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TCF4P15884 667 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ATP2A2P16615 1042 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 GNAZP19086 355 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 KLRC2P26717 231 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SKIV2L2P42285 1042 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 GPC3P51654 580 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 MFAP3P55082 362 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ACVR2BQ13705 512 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 MOGSQ13724 837 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SNRNP35Q16560 246 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ATP13A4Q4VNC1 1196 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 IZUMO3Q5VZ72 239 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 CDCA2Q69YH5 1023 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 MIS18BP1Q6P0N0 1132 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SYDE1Q6ZW31 735 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 TRABD2AQ86V40 505 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 MCOLN2Q8IZK6 566 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ATL2Q8NHH9 583 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SLC7A6OSQ96CW6 309 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 SPDL1Q96EA4 605 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PLVAPQ9BX97 442 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 PITPNM3Q9BZ71 974 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 FHDC1Q9C0D6 1143 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 KIAA1683Q9H0B3 1180 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 KCNH7Q9NS40 1196 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 KLHL11Q9NVR0 708 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 COQ4Q9Y3A0 265 aa5.76□□□□□ -1.49
LIMA1-212ENST00000552491 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 ZNF646O15015 1829 aaPredicted RBP5.76□□□□□ -1.49
LIMA1-212ENST00000552491 EME2A4GXA9 379 aaPredicted RBP5.75□□□□□ -1.49
LIMA1-212ENST00000552491 FAM47DPA6NHR8 397 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 PIAS1O75925 651 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 CBX6O95503 412 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 CD58P19256 250 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MAGEA4P43358 317 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 CCNG1P51959 295 aa5.75□□□□□ -1.49
LIMA1-212ENST00000552491 MCCD1P59942 119 aaPredicted RBP5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms