RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 CNTN6Q9UQ52 1028 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 KIAA1671Q9BY89 1806 aa10.32□□□□□ -0.76
LIMA1-211ENST00000552338 DDHD2O94830 711 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 GJB5O95377 273 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 ACRP10323 421 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 UCHL3P15374 230 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 FECHP22830 423 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 TBXAS1P24557 533 aaPredicted RBP10.31□□□□□ -0.76
LIMA1-211ENST00000552338 HNRNPH3P31942 346 aaKnown RBP10.31□□□□□ -0.76
LIMA1-211ENST00000552338 SCNN1GP51170 649 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 DEFB103AP81534 67 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 LMBRD2Q68DH5 695 aaPredicted RBP10.31□□□□□ -0.76
LIMA1-211ENST00000552338 PHLDB3Q6NSJ2 640 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 DCLRE1AQ6PJP8 1040 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 CD300LGQ6UXG3 332 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 UBR7Q8N806 425 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 URGCPQ8TCY9 931 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 FAM212AQ96EL1 285 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 LBHD1Q9BQE6 289 aaPredicted RBP10.31□□□□□ -0.76
LIMA1-211ENST00000552338 APOL6Q9BWW8 343 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 BCO2Q9BYV7 579 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 MTIF3Q9H2K0 278 aaKnown RBP10.31□□□□□ -0.76
LIMA1-211ENST00000552338 CWH43Q9H720 699 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 TBC1D13Q9NVG8 400 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 GCNT4Q9P109 453 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 CEP72Q9P209 647 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 APEX2Q9UBZ4 518 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 LRFN2Q9ULH4 789 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 VWA8A3KMH1 1905 aa10.31□□□□□ -0.76
LIMA1-211ENST00000552338 NLRC5Q86WI3 1866 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 GBF1Q92538 1859 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 LRRN2O75325 713 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 ITGB3P05106 788 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 LINC00271P0C7V0 271 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 FGFR1P11362 822 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 SYN1P17600 705 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 KCNJ6P48051 423 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 JAM2P57087 298 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 LILRA4P59901 499 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 MYL6P60660 151 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 SCARA3Q6AZY7 606 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 OTOP2Q7RTS6 562 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 FMNL3Q8IVF7 1028 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 DRC7Q8IY82 874 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 LRRC43Q8N309 656 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 TTC39CQ8N584 583 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 BAP1Q92560 729 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 SYN2Q92777 582 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-211ENST00000552338 CLP1Q92989 425 aaKnown RBP10.3□□□□□ -0.76
LIMA1-211ENST00000552338 C18orf25Q96B23 403 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-211ENST00000552338 ZNF560Q96MR9 790 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 NT5C1BQ96P26 610 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 STK33Q9BYT3 514 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 INTS2Q9H0H0 1204 aaKnown RBP10.3□□□□□ -0.76
LIMA1-211ENST00000552338 NUCKS1Q9H1E3 243 aaKnown RBP10.3□□□□□ -0.76
LIMA1-211ENST00000552338 NRDE2Q9H7Z3 1164 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 CYP3A43Q9HB55 503 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 APOBEC3GQ9HC16 384 aaKnown RBP10.3□□□□□ -0.76
LIMA1-211ENST00000552338 AIPL1Q9NZN9 384 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 TUBGCP4Q9UGJ1 667 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 ZMYND8Q9ULU4 1186 aaPredicted RBP10.3□□□□□ -0.76
LIMA1-211ENST00000552338 INSL6Q9Y581 213 aa10.3□□□□□ -0.76
LIMA1-211ENST00000552338 TSC2P49815 1807 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 M0QZQ0 153 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 HAX1O00165 279 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 EPHB6O15197 1021 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 PHACTR2O75167 634 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 TACC1O75410 805 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 GYPCP04921 128 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 ALDH2P05091 517 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 CYP11A1P05108 521 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 POLR2BP30876 1174 aaKnown RBP10.29□□□□□ -0.76
LIMA1-211ENST00000552338 PIK3CAP42336 1068 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 MAGEA10P43363 369 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-211ENST00000552338 TAF6P49848 677 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 NOP14P78316 857 aaKnown RBP10.29□□□□□ -0.76
LIMA1-211ENST00000552338 ZBED6P86452 979 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 PLCB2Q00722 1185 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 MYO1EQ12965 1108 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 BIRC3Q13489 604 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 TRPC3Q13507 836 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 WDR44Q5JSH3 913 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 GLRA4Q5JXX5 417 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 ZNF280BQ86YH2 543 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 GPR65Q8IYL9 337 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 RNF168Q8IYW5 571 aaPredicted RBP10.29□□□□□ -0.76
LIMA1-211ENST00000552338 ABI1Q8IZP0 508 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 CCDC150Q8NCX0 1101 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 NEK11Q8NG66 645 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 SHC3Q92529 594 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 ANP32BQ92688 251 aaKnown RBP10.29□□□□□ -0.76
LIMA1-211ENST00000552338 TATDN2Q93075 761 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 HPDLQ96IR7 371 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 RAD9AQ99638 391 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 CRACR2AQ9BSW2 395 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 IMPG2Q9BZV3 1241 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 GPR88Q9GZN0 384 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 PRO3102Q9H379 93 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 MMRN2Q9H8L6 949 aa10.29□□□□□ -0.76
LIMA1-211ENST00000552338 CXXC1Q9P0U4 656 aaPredicted RBP10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms