RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, human

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCH1-223	ENST00000551623	MYBBP1A	Q9BQG0	1328 aa	Known RBP	2.93	□□□□□ -1.94
PTCH1-223	ENST00000551623	GVINP1	Q7Z2Y8	2422 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	CACNA1B	Q00975	2339 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	ATRX	P46100	2492 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	RFX7	Q2KHR2	1363 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	ROBO3	Q96MS0	1386 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	CACNA1H	O95180	2353 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	PLXNB2	O15031	1838 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	PMS2P1	A4D2B8	440 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	TRIM43B	A6NCK2	446 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	IKBKB	O14920	756 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	SLC26A4	O43511	780 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	SUSD5	O60279	629 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	SNRPB2	P08579	225 aa	Known RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	HOXC6	P09630	235 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	NAT2	P11245	290 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	ATF4	P18848	351 aa	Predicted RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	HOXC12	P31275	282 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	ETFB	P38117	255 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	ECI1	P42126	302 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	MAN2A2	P49641	1150 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	CLK3	P49761	638 aa	Known RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	GFRA1	P56159	465 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	TFF2	Q03403	129 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	MAPK7	Q13164	816 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	PTPA	Q15257	358 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	WDR72	Q3MJ13	1102 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	HECTD2	Q5U5R9	776 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	C9orf106	Q8NAJ2	232 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	PROKR1	Q8TCW9	393 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	LPAR1	Q92633	364 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	BAD	Q92934	168 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	TRIM43	Q96BQ3	446 aa	Predicted RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	TIFA	Q96CG3	184 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	RNPC3	Q96LT9	517 aa	Known RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	MLST8	Q9BVC4	326 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	JAM3	Q9BX67	310 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	OR10A2	Q9H208	303 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	TDRD3	Q9H7E2	651 aa	Known RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	AGO3	Q9H9G7	860 aa	Known RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	ALG13	Q9NP73	1137 aa	Known RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	SLC39A2	Q9NP94	309 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	IGSF5	Q9NSI5	407 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	MIS18A	Q9NYP9	233 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	AGTPBP1	Q9UPW5	1226 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	SH3BP1	Q9Y3L3	701 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	TELO2	Q9Y4R8	837 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	AFG3L2	Q9Y4W6	797 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	DCHS1	Q96JQ0	3298 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	DNAH12	Q6ZR08	3092 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZFHX2	Q9C0A1	2572 aa	Predicted RBP	2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	C5orf42	Q9H799	3197 aa		2.92	□□□□□ -1.94
PTCH1-223	ENST00000551623	NCOR2	Q9Y618	2525 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	REV3L	O60673	3130 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	LRRC37A2	A6NM11	1700 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	FAM20B	O75063	409 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	CP	P00450	1065 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ANXA1	P04083	346 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ALAD	P13716	330 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZNF143	P52747	638 aa	Predicted RBP	2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	HGFAC	Q04756	655 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	RAB30	Q15771	203 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	LY6G5C	Q5SRR4	150 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	SLC35F1	Q5T1Q4	408 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	APOBEC3H	Q6NTF7	200 aa	Known RBP	2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	SLC39A5	Q6ZMH5	540 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	OTOP3	Q7RTS5	596 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ANKRD33	Q7Z3H0	272 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZNF804A	Q7Z570	1209 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	BMP8A	Q7Z5Y6	402 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	FAM178B	Q8IXR5	827 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	OR14K1	Q8NGZ2	314 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	TDRD7	Q8NHU6	1098 aa	Known RBP	2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	UHMK1	Q8TAS1	419 aa	Known RBP	2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	SMCR8	Q8TEV9	937 aa	Predicted RBP	2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	FAM151A	Q8WW52	585 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	MIEF2	Q96C03	454 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	SEC16B	Q96JE7	1060 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	SPATA32	Q96LK8	384 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	PLEKHF1	Q96S99	279 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	TGIF2	Q9GZN2	237 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	PRDM13	Q9H4Q3	707 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	PRDM12	Q9H4Q4	367 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	HYPK	Q9NX55	129 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	DBF4	Q9UBU7	674 aa	Predicted RBP	2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	NUB1	Q9Y5A7	615 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	LOC285556	D6RIA3	1793 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	USP34	Q70CQ2	3546 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	RLF	Q13129	1914 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	WDFY4	Q6ZS81	3184 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZFHX4	Q86UP3	3567 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	GAK	O14976	1311 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ZNF521	Q96K83	1311 aa		2.91	□□□□□ -1.94
PTCH1-223	ENST00000551623	ANKRD11	Q6UB99	2663 aa	Predicted RBP	2.9	□□□□□ -1.94
PTCH1-223	ENST00000551623	ACACB	O00763	2458 aa		2.9	□□□□□ -1.95
PTCH1-223	ENST00000551623	COL4A3	Q01955	1670 aa		2.9	□□□□□ -1.95
PTCH1-223	ENST00000551623	TCP10L2	B9ZVM9	353 aa		2.9	□□□□□ -1.95
PTCH1-223	ENST00000551623	ACOT7	O00154	380 aa		2.9	□□□□□ -1.95
PTCH1-223	ENST00000551623	CHL1	O00533	1208 aa		2.9	□□□□□ -1.95

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