RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 PTGESO14684 152 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 RHOP08100 348 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 VSIG8P0DPA2 414 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 CEBPBP17676 345 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 GLRA2P23416 452 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 RPS6KB1P23443 525 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 IGFBP6P24592 240 aaPredicted RBP11.61□□□□□ -0.55
VPS29-208ENST00000550267 IRX6P78412 446 aaPredicted RBP11.61□□□□□ -0.55
VPS29-208ENST00000550267 POU5F1BQ06416 359 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 SSRP1Q08945 709 aaKnown RBP11.61□□□□□ -0.55
VPS29-208ENST00000550267 NR5A1Q13285 461 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 GRM2Q14416 872 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 UVSSAQ2YD98 709 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 LAIR1Q6GTX8 287 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 PRR23BQ6ZRT6 265 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 SKAP1Q86WV1 359 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 TRIM22Q8IYM9 498 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 HAS1Q92839 578 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 DNASE1L2Q92874 299 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 YTHDC1Q96MU7 727 aaKnown RBP11.61□□□□□ -0.55
VPS29-208ENST00000550267 AIFM3Q96NN9 605 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 CHRDQ9H2X0 955 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 ZSWIM4Q9H7M6 989 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 RALYQ9UKM9 306 aaKnown RBP11.61□□□□□ -0.55
VPS29-208ENST00000550267 SNX14Q9Y5W7 946 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 ZMYM2Q9UBW7 1377 aa11.61□□□□□ -0.55
VPS29-208ENST00000550267 ARID2Q68CP9 1835 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 MARCH6O60337 910 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 SLITRK3O94933 977 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 DEXIO95424 95 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 RETP07949 1114 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 FCARP24071 287 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 ARL2P36404 184 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 NRLP54845 237 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 ELAVL2Q12926 359 aaKnown RBP11.6□□□□□ -0.55
VPS29-208ENST00000550267 NAB2Q15742 525 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 PDXDC1Q6P996 788 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.6□□□□□ -0.55
VPS29-208ENST00000550267 KRT25Q7Z3Z0 450 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 TPH2Q8IWU9 490 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 FBXL16Q8N461 479 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 CELF5Q8N6W0 485 aaKnown RBP11.6□□□□□ -0.55
VPS29-208ENST00000550267 KCNB2Q92953 911 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 ELSPBP1Q96BH3 223 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 NFKBIZQ9BYH8 718 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 LMAN1LQ9HAT1 526 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 SEMA4GQ9NTN9 838 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 SNTG2Q9NY99 539 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 GDE1Q9NZC3 331 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 MTRRQ9UBK8 725 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 KCNJ14Q9UNX9 436 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 CDY1Q9Y6F8 540 aa11.6□□□□□ -0.55
VPS29-208ENST00000550267 DOCK6Q96HP0 2047 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 MAN2B1O00754 1011 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 CCNT1O60563 726 aaKnown RBP11.59□□□□□ -0.55
VPS29-208ENST00000550267 LRP3O75074 770 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 THP07101 528 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 FGFR3P22607 806 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 SPIRE1Q08AE8 756 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 DMWDQ09019 674 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 SRSF5Q13243 272 aaKnown RBP11.59□□□□□ -0.55
VPS29-208ENST00000550267 PPP2R5DQ14738 602 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 ARID5BQ14865 1188 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 BMP2KLQ5H9B9 411 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 PPP4R3AQ6IN85 833 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 GALNT17Q6IS24 598 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 PRR23CQ6ZRP0 262 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 NEK8Q86SG6 692 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 POLR3FQ9H1D9 316 aaPredicted RBP11.59□□□□□ -0.55
VPS29-208ENST00000550267 BRD9Q9H8M2 597 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 MAP10Q9P2G4 905 aa11.59□□□□□ -0.55
VPS29-208ENST00000550267 A0A087WWV3 80 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 CCDC194A0A1B0GVG4 234 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 LRRIQ4A6NIV6 560 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 SOBPA7XYQ1 873 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 CHURC1-FNTBB4DL54 471 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 TBX3O15119 743 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 RECQL4O94761 1208 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 ZIC2O95409 532 aaPredicted RBP11.58□□□□□ -0.56
VPS29-208ENST00000550267 GCFC2P16383 781 aaKnown RBP11.58□□□□□ -0.56
VPS29-208ENST00000550267 TKTP29401 623 aaKnown RBP11.58□□□□□ -0.56
VPS29-208ENST00000550267 FNTBP49356 437 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 CCR3P51677 355 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 EVCP57679 992 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 SATB1Q01826 763 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 SIM2Q14190 667 aaPredicted RBP11.58□□□□□ -0.56
VPS29-208ENST00000550267 CSRP2Q16527 193 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 FAM78AQ5JUQ0 283 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 PRSS36Q5K4E3 855 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 MAEAQ7L5Y9 396 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 FAM3CQ92520 227 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 TCEAL4Q96EI5 215 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 EIF2AK1Q9BQI3 630 aaKnown RBP11.58□□□□□ -0.56
VPS29-208ENST00000550267 CORO1BQ9BR76 489 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 IER2Q9BTL4 223 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 TRMT61BQ9BVS5 477 aaKnown RBP11.58□□□□□ -0.56
VPS29-208ENST00000550267 PDZD7Q9H5P4 517 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 ZNF334Q9HCZ1 680 aaPredicted RBP11.58□□□□□ -0.56
VPS29-208ENST00000550267 GPRC5CQ9NQ84 441 aa11.58□□□□□ -0.56
VPS29-208ENST00000550267 AVENQ9NQS1 362 aaPredicted RBP11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms