RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 MROH8Q9H579 483 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 KIAA1586Q9HCI6 787 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 DNAJC17Q9NVM6 304 aaKnown RBP11.84□□□□□ -0.51
CUX1-212ENST00000547394 ADAM22Q9P0K1 906 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 HMGXB4Q9UGU5 601 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 CPA4Q9UI42 421 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 IVNS1ABPQ9Y6Y0 642 aa11.84□□□□□ -0.51
CUX1-212ENST00000547394 GOLGA6CA6NDK9 693 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 HSF2BPO75031 334 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 LGR5O75473 907 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 CELF2O95319 508 aaKnown RBP11.83□□□□□ -0.52
CUX1-212ENST00000547394 C22orf31O95567 290 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 SNAI1O95863 264 aaPredicted RBP11.83□□□□□ -0.52
CUX1-212ENST00000547394 HOXC6P09630 235 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 TMEM191BP0C7N4 346 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 GOLGA6DP0CG33 693 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 MBTD1Q05BQ5 628 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 TRPC3Q13507 836 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 UAP1Q16222 522 aaPredicted RBP11.83□□□□□ -0.52
CUX1-212ENST00000547394 ZFYVE27Q5T4F4 411 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 ANKS1BQ7Z6G8 1248 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 GOLGA6L1Q8N7Z2 621 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 FAM167AQ96KS9 214 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 CDT1Q9H211 546 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 TMEM134Q9H6X4 195 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 VIPAS39Q9H9C1 493 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 IFT122Q9HBG6 1241 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.83□□□□□ -0.52
CUX1-212ENST00000547394 GOLGA6AQ9NYA3 693 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 PLAAQ9Y263 795 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 OGTO15294 1046 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 ITGBL1O95965 494 aaPredicted RBP11.83□□□□□ -0.52
CUX1-212ENST00000547394 RARAP10276 462 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 CD19P15391 556 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 TAS2R40P59535 323 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 KIZQ2M2Z5 673 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 C11orf63Q6NUN7 778 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 FMNL3Q8IVF7 1028 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 CCDC50Q8IVM0 306 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 ZC3H15Q8WU90 426 aaKnown RBP11.83□□□□□ -0.52
CUX1-212ENST00000547394 ZNF606Q8WXB4 792 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 CD101Q93033 1021 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 CISHQ9NSE2 258 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 ATP8A1Q9Y2Q0 1164 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 A0A0G2JMZ2 1700 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 DOCK3Q8IZD9 2030 aa11.83□□□□□ -0.52
CUX1-212ENST00000547394 LAMA3Q16787 3333 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 SMIM23A6NLE4 172 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 LDHAP00338 332 aaKnown RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 HSD17B3P37058 310 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 POU5F1Q01860 360 aaKnown RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 MXD4Q14582 209 aaPredicted RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 ZNF699Q32M78 642 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 WDR72Q3MJ13 1102 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 CEP85LQ5SZL2 805 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 NLRP7Q8WX94 980 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 MPHOSPH6Q99547 160 aaKnown RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 IMPG2Q9BZV3 1241 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 RRAGCQ9HB90 399 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 MED4Q9NPJ6 270 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 SETD4Q9NVD3 440 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 ERAP1Q9NZ08 941 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 BCCIPQ9P287 314 aaKnown RBP eCLIP11.82□□□□□ -0.52
CUX1-212ENST00000547394 CPSF3Q9UKF6 684 aaKnown RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 HES2Q9Y543 173 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 IGKV6-21A0A0C4DH24 114 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 SMPD1P17405 629 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 EFNA5P52803 228 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 NOMO3P69849 1222 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 DHX9Q08211 1270 aaKnown RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 ZNF792Q3KQV3 632 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 SEL1L2Q5TEA6 688 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 CDCA2Q69YH5 1023 aaPredicted RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 MPZL3Q6UWV2 235 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 PLPPR4Q7Z2D5 763 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 GPR142Q7Z601 462 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 JAMLQ86YT9 394 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 ABRAQ8N0Z2 381 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 CAVIN3Q969G5 261 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 R3HDM2Q9Y2K5 976 aaKnown RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 UTP11Q9Y3A2 253 aaKnown RBP11.82□□□□□ -0.52
CUX1-212ENST00000547394 LOC285556D6RIA3 1793 aa11.82□□□□□ -0.52
CUX1-212ENST00000547394 LACTBL1A8MY62 500 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 GOLGA8SH3BPF8 625 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 MYO1FO00160 1098 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CES2O00748 559 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 ASS1P00966 412 aaKnown RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 HPDP32754 393 aaPredicted RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 PTENP60484 403 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 DUOXA2Q1HG44 320 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 KAZNQ674X7 775 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 TXNRD3NBQ6F5E7 133 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CCDC137Q6PK04 289 aaKnown RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 ZPBP2Q6X784 338 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 MON1BQ7L1V2 547 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 CCDC105Q8IYK2 499 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 KIAA0319LQ8IZA0 1049 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 NPLOC4Q8TAT6 608 aa11.81□□□□□ -0.52
CUX1-212ENST00000547394 RNF25Q96BH1 459 aaPredicted RBP11.81□□□□□ -0.52
CUX1-212ENST00000547394 CALR3Q96L12 384 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms