RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 LINC01465Q8N7H1 131 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 ACTRT1Q8TDG2 376 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 C11orf70Q9BRQ4 267 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 RPF1Q9H9Y2 349 aaKnown RBP15.54■□□□□ 0.08
CLIP1-216ENST00000541410 RNF19AQ9NV58 838 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 TNFSF13BQ9Y275 285 aa15.54■□□□□ 0.08
CLIP1-216ENST00000541410 SLC15A5A6NIM6 579 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 LACTBL1A8MY62 500 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 ASAP2O43150 1006 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 STAG3L1P0CL83 205 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 TMOD1P28289 359 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 CARSP49589 748 aaKnown RBP15.53■□□□□ 0.08
CLIP1-216ENST00000541410 BEX3Q00994 111 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 KIAA0319LQ8IZA0 1049 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 RNPC3Q96LT9 517 aaKnown RBP15.53■□□□□ 0.08
CLIP1-216ENST00000541410 PDZD7Q9H5P4 517 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 PRMT7Q9NVM4 692 aaPredicted RBP15.53■□□□□ 0.08
CLIP1-216ENST00000541410 A0A0U1RQG5 324 aaPredicted RBP15.53■□□□□ 0.08
CLIP1-216ENST00000541410 MAGEB2O15479 319 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 OAS2P29728 719 aaKnown RBP15.53■□□□□ 0.08
CLIP1-216ENST00000541410 GYS2P54840 703 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 JADE1Q6IE81 842 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 MCOLN2Q8IZK6 566 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 CXCL16Q9H2A7 254 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 CDHR5Q9HBB8 845 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 AMACRQ9UHK6 382 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 TMEM59LQ9UK28 342 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 GTF3C4Q9UKN8 822 aa15.53■□□□□ 0.08
CLIP1-216ENST00000541410 TRPM7Q96QT4 1865 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 CITO14578 2027 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 ATP8B1O43520 1251 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 SPOPO43791 374 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 CYP1A2P05177 515 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 BRD2P25440 801 aaKnown RBP15.52■□□□□ 0.08
CLIP1-216ENST00000541410 NSFP46459 744 aaKnown RBP15.52■□□□□ 0.08
CLIP1-216ENST00000541410 CDH8P55286 799 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 MAP2K5Q13163 448 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 ZNF699Q32M78 642 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 MORN1Q5T089 497 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 IQSEC1Q6DN90 963 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 SND1Q7KZF4 910 aaKnown RBP eCLIP15.52■□□□□ 0.08
CLIP1-216ENST00000541410 ZIC5Q96T25 663 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 CELF4Q9BZC1 486 aaKnown RBP15.52■□□□□ 0.08
CLIP1-216ENST00000541410 ANAPC7Q9UJX3 599 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 NFU1Q9UMS0 254 aa15.52■□□□□ 0.08
CLIP1-216ENST00000541410 TUBBP07437 444 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 TBXAS1P24557 533 aaPredicted RBP15.51■□□□□ 0.07
CLIP1-216ENST00000541410 MCM3P25205 808 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 FAM193AP78312 1265 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 HIC1Q14526 733 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 DDX42Q86XP3 938 aaKnown RBP eCLIP15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ERVK-5Q9HDB9 667 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 CISHQ9NSE2 258 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 CES2O00748 559 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 SART1O43290 800 aaKnown RBP15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ERLIN2O94905 339 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 TNNC2P02585 160 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 TNNC1P63316 161 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ZNF200P98182 395 aaPredicted RBP15.51■□□□□ 0.07
CLIP1-216ENST00000541410 MMS22LQ6ZRQ5 1243 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 SAPCD2Q86UD0 394 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 TLK2Q86UE8 772 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 RASGEF1CQ8N431 466 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ZNF606Q8WXB4 792 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ANKRD36BP1Q96IX9 119 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ZSWIM1Q9BR11 485 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 XYLT2Q9H1B5 865 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ZSWIM8A7E2V4 1837 aa15.51■□□□□ 0.07
CLIP1-216ENST00000541410 ZEB2O60315 1214 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 TSPAN1O60635 241 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 ITGB3P05106 788 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 FAM153BP0C7A2 387 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 BPIFB4P59827 614 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 SGSM1Q2NKQ1 1148 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 WDR72Q3MJ13 1102 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 FAM153CQ494X1 144 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 MAP9Q49MG5 647 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 C11orf63Q6NUN7 778 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 C1orf127Q8N9H9 656 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 AENQ8WTP8 325 aaKnown RBP15.5■□□□□ 0.07
CLIP1-216ENST00000541410 CASKIN2Q8WXE0 1202 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 RIN2Q8WYP3 895 aaPredicted RBP15.5■□□□□ 0.07
CLIP1-216ENST00000541410 CCDC102AQ96A19 550 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 FAM81BQ96LP2 452 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 NIF3L1Q9GZT8 377 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 FAM153AQ9UHL3 310 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 SIX4Q9UIU6 781 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 CYP1A1P04798 512 aaPredicted RBP15.5■□□□□ 0.07
CLIP1-216ENST00000541410 SMIM10L2AP0DMW4 78 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 SMIM10L2BP0DMW5 78 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 ASPAP45381 313 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 HADHBP55084 474 aaKnown RBP15.5■□□□□ 0.07
CLIP1-216ENST00000541410 SLC10A6Q3KNW5 377 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 CHADLQ6NUI6 762 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 RUFY4Q6ZNE9 571 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 KAT2BQ92831 832 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 OSMRQ99650 979 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 SLC5A4Q9NY91 659 aa15.5■□□□□ 0.07
CLIP1-216ENST00000541410 GNEQ9Y223 722 aaKnown RBP15.5■□□□□ 0.07
CLIP1-216ENST00000541410 HES2Q9Y543 173 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms