RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 MTAPQ13126 283 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 FZD5Q13467 585 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 NEDD9Q14511 834 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 SMC1AQ14683 1233 aaKnown RBP9.11□□□□□ -0.95
CHD4-208ENST00000540960 KRT31Q15323 416 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 NFIL3Q16649 462 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 MAN2A1Q16706 1144 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 BMT2Q1RMZ1 405 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 B3GNT9Q6UX72 402 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 TMTC1Q8IUR5 882 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 CACTINQ8WUQ7 758 aaKnown RBP9.11□□□□□ -0.95
CHD4-208ENST00000540960 HNRNPLLQ8WVV9 542 aaKnown RBP9.11□□□□□ -0.95
CHD4-208ENST00000540960 PIK3R5Q8WYR1 880 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 HVCN1Q96D96 273 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 INPP4AQ96PE3 977 aaPredicted RBP9.11□□□□□ -0.95
CHD4-208ENST00000540960 BAG1Q99933 345 aaPredicted RBP9.11□□□□□ -0.95
CHD4-208ENST00000540960 TUBGCP2Q9BSJ2 902 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 BHMT2Q9H2M3 363 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 TMX1Q9H3N1 280 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 SMOC1Q9H4F8 434 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 TMEM206Q9H813 350 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 SLC39A2Q9NP94 309 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 SLC2A4RGQ9NR83 387 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 DZANK1Q9NVP4 752 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 COL20A1Q9P218 1284 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 KLK13Q9UKR3 277 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 LRFN2Q9ULH4 789 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 EXOC7Q9UPT5 735 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 PCDHA10Q9Y5I2 948 aa9.11□□□□□ -0.95
CHD4-208ENST00000540960 TEX15Q9BXT5 2789 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 A0A087WWV3 80 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 SPATA31C2B4DYI2 1134 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 E9PMD0 336 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 PES1O00541 588 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 SLC16A3O15427 465 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 HYAL3O43820 417 aaPredicted RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 KRT38O76015 456 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 CXCL14O95715 111 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 MYCLP12524 364 aaPredicted RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 EIF2AK2P19525 551 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 CASP1P29466 404 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 SMTNP53814 917 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 MARSP56192 900 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 TBX2Q13207 712 aaPredicted RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 GIT2Q14161 759 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 KNOP1Q1ED39 458 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 ANKRD40Q6AI12 368 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 TSHZ1Q6ZSZ6 1077 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 USP37Q86T82 979 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 SMYD4Q8IYR2 804 aaPredicted RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 LMBR1Q8WVP7 490 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 KIFAP3Q92845 792 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 CLDN23Q96B33 292 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 DYDC2Q96IM9 177 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 LRIG1Q96JA1 1093 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 SPATA33Q96N06 139 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 NAP1L5Q96NT1 182 aaPredicted RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 LXNQ9BS40 222 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 MKNK1Q9BUB5 465 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 UNC45AQ9H3U1 944 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 ZHX3Q9H4I2 956 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 MRPL44Q9H9J2 332 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 LTB4R2Q9NPC1 389 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 LUC7LQ9NQ29 371 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 EPS15L1Q9UBC2 864 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 TRAF3IP3Q9Y228 551 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 LUC7L2Q9Y383 392 aaKnown RBP9.1□□□□□ -0.95
CHD4-208ENST00000540960 TELO2Q9Y4R8 837 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 RAI2Q9Y5P3 530 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 CDY2AQ9Y6F7 541 aa9.1□□□□□ -0.95
CHD4-208ENST00000540960 ANKRD17O75179 2603 aaKnown RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 A0A1W2PQJ5 194 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 CHMP2AO43633 222 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 MGEA5O60502 916 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 LGALS2P05162 132 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 FGFR1P11362 822 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 TARSP26639 723 aaKnown RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 HOXC13P31276 330 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 ZNF131P52739 623 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 SRSF1Q07955 248 aaKnown RBP eCLIP9.09□□□□□ -0.95
CHD4-208ENST00000540960 CCDC40Q4G0X9 1142 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 VWA3BQ502W6 1294 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 CELF3Q5SZQ8 465 aaKnown RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 FAM160B1Q5W0V3 765 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 RINT1Q6NUQ1 792 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 KCNT2Q6UVM3 1135 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 C1orf186Q6ZWK4 172 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 CREBRFQ8IUR6 639 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 FAM160A2Q8N612 972 aaPredicted RBP9.09□□□□□ -0.95
CHD4-208ENST00000540960 MYCT1Q8N699 235 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 KIAA0895Q8NCT3 520 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 MCPH1Q8NEM0 835 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 OR8K1Q8NGG5 319 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 ZNF507Q8TCN5 953 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 TMEM174Q8WUU8 243 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 DNAJB3Q8WWF6 145 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 ZBTB10Q96DT7 871 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 SHDQ96IW2 340 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 FAM167AQ96KS9 214 aa9.09□□□□□ -0.95
CHD4-208ENST00000540960 CNOT6LQ96LI5 555 aaKnown RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms