RNA–Protein interactions for RNA: ENST00000540931.1

CLSTN3-210, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-210ENST00000540931 TMEM8AQ9HCN3 771 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 NGRNQ9NPE2 291 aaKnown RBP18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 DNAJB4Q9UDY4 337 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 DSEQ9UL01 958 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 UTP18Q9Y5J1 556 aaKnown RBP eCLIP18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 GBF1Q92538 1859 aa18.9■□□□□ 0.62
CLSTN3-210ENST00000540931 NCOR1O75376 2440 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 PDCD11Q14690 1871 aaKnown RBP18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 ANO9A1A5B4 782 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 CASTOR2A6NHX0 329 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 TULP1O00294 542 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 PIRO00625 290 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 STAU1O95793 577 aaKnown RBP18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 FAM163BP0C2L3 166 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 P4HA1P13674 534 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 TAF6P49848 677 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 CLCNKBP51801 687 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 TCERG1LQ5VWI1 586 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 C9orf57Q5W0N0 161 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 SMYD5Q6GMV2 418 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 TRAPPC11Q7Z392 1133 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 EFCAB13Q8IY85 973 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 KLHL23Q8NBE8 558 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 ZSWIM2Q8NEG5 633 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 APPL2Q8NEU8 664 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 ARNTL2Q8WYA1 636 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 GAS2L1Q99501 681 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 C17orf80Q9BSJ5 609 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 FUCA2Q9BTY2 467 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 DNAI2Q9GZS0 605 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 DNAJC25Q9H1X3 360 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 FAM124BQ9H5Z6 455 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 PRG3Q9Y2Y8 225 aaPredicted RBP18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 NFE2L3Q9Y4A8 694 aa18.89■□□□□ 0.61
CLSTN3-210ENST00000540931 LRRIQ3A6PVS8 624 aaPredicted RBP18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 SYN3O14994 580 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 MEFVO15553 781 aaPredicted RBP18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 SOD2P04179 222 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 BIRC3Q13489 604 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 SGSM1Q2NKQ1 1148 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 USP41Q3LFD5 358 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 ZACNQ401N2 412 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 LRSAM1Q6UWE0 723 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 DPH6Q7L8W6 267 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 C18orf25Q96B23 403 aaPredicted RBP18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 MTMR12Q9C0I1 747 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 NLRC5Q86WI3 1866 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 TRIP11Q15643 1979 aa18.88■□□□□ 0.61
CLSTN3-210ENST00000540931 C1RP00736 705 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 KRT19P08727 400 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 POU3F3P20264 500 aaPredicted RBP18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 SOX4Q06945 474 aaPredicted RBP18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 KIAA1841Q6NSI8 718 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 FUT10Q6P4F1 479 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 TRIM59Q8IWR1 403 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 C1orf127Q8N9H9 656 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 CNOT6LQ96LI5 555 aaKnown RBP18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 VRTNQ9H8Y1 702 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 TLR9Q9NR96 1032 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 TUBGCP4Q9UGJ1 667 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 AGAP1Q9UPQ3 857 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 IRAK3Q9Y616 596 aa18.87■□□□□ 0.61
CLSTN3-210ENST00000540931 ANK1P16157 1881 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 GOLGA6L19H0YKK7 550 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 C4BPAP04003 597 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 ITGB3P05106 788 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 ITGB1P05556 798 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 URODP06132 367 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 TRIM21P19474 475 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 COL9A1P20849 921 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 CDK11BP21127 795 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 MTIF2P46199 727 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 AARSP49588 968 aaKnown RBP eCLIP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 MXI1P50539 228 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 LILRA4P59901 499 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 ZNF445P59923 1031 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 DCAF17Q5H9S7 520 aaPredicted RBP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 SV2AQ7L0J3 742 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 TTC39CQ8N584 583 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 FBXL13Q8NEE6 735 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 FAM200AQ8TCP9 573 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 SPPL3Q8TCT6 385 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 ATXN2LQ8WWM7 1075 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 SLC35C1Q96A29 364 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 SUSD3Q96L08 255 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 FAM81BQ96LP2 452 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 HERC2P3Q9BVR0 1158 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 TSPY26PQ9H489 355 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 PRDM12Q9H4Q4 367 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 MRPL17Q9NRX2 175 aaKnown RBP18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 GDAP2Q9NXN4 497 aa18.86■□□□□ 0.61
CLSTN3-210ENST00000540931 CHD9Q3L8U1 2897 aa18.85■□□□□ 0.61
CLSTN3-210ENST00000540931 KPNA7A9QM74 516 aa18.85■□□□□ 0.61
CLSTN3-210ENST00000540931 H7C4K7 107 aa18.85■□□□□ 0.61
CLSTN3-210ENST00000540931 M0QZQ0 153 aa18.85■□□□□ 0.61
CLSTN3-210ENST00000540931 NCK2O43639 380 aa18.85■□□□□ 0.61
CLSTN3-210ENST00000540931 KIF4AO95239 1232 aa18.85■□□□□ 0.61
CLSTN3-210ENST00000540931 AFPP02771 609 aaKnown RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms