RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 EXOC3O60645 756 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 URODP06132 367 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 FGFR3P22607 806 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 MORC3Q14149 939 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 SLC9A9Q8IVB4 645 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 GLYCTKQ8IVS8 523 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 ADSSL1Q8N142 457 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 C1orf127Q8N9H9 656 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 LNX1Q8TBB1 728 aaPredicted RBP17.05■□□□□ 0.32
RPAIN-206ENST00000539417 SLC22A17Q8WUG5 538 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 ZNF516Q92618 1163 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 HLA-CQ95604 372 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 MTMR12Q9C0I1 747 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 CLSTN2Q9H4D0 955 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 MRPL17Q9NRX2 175 aaKnown RBP17.05■□□□□ 0.32
RPAIN-206ENST00000539417 CGNQ9P2M7 1197 aaKnown RBP17.05■□□□□ 0.32
RPAIN-206ENST00000539417 HOOK1Q9UJC3 728 aaKnown RBP17.05■□□□□ 0.32
RPAIN-206ENST00000539417 PPP1R3GB7ZBB8 358 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 EPCAMP16422 314 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 KCNA5P22460 613 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 MCM4P33991 863 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 KCNQ1P51787 676 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 PSMD6Q15008 389 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 CLUL1Q15846 466 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 GOLGA5Q8TBA6 731 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 CCDC127Q96BQ5 260 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 MFSD14AQ96MC6 490 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 TTPALQ9BTX7 342 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 RXFP1Q9HBX9 757 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 SIX4Q9UIU6 781 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 TIMM13Q9Y5L4 95 aaPredicted RBP17.05■□□□□ 0.32
RPAIN-206ENST00000539417 HCFC2Q9Y5Z7 792 aa17.05■□□□□ 0.32
RPAIN-206ENST00000539417 CALUO43852 315 aaPredicted RBP17.04■□□□□ 0.32
RPAIN-206ENST00000539417 ITGB3P05106 788 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 DLATP10515 647 aaKnown RBP17.04■□□□□ 0.32
RPAIN-206ENST00000539417 LILRA4P59901 499 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 DLG4P78352 724 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 COBLL1Q53SF7 1204 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 CEP135Q66GS9 1140 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 ANKRD40Q6AI12 368 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 CENPPQ6IPU0 288 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 KIAA1841Q6NSI8 718 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.04■□□□□ 0.32
RPAIN-206ENST00000539417 TMEM174Q8WUU8 243 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 BORCS6Q96GS4 357 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 SUSD3Q96L08 255 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 TSPAN18Q96SJ8 248 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 CLSTN3Q9BQT9 956 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 KIAA1586Q9HCI6 787 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 INTS13Q9NVM9 706 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 KIAA1468Q9P260 1216 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 THEGQ9P2T0 379 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 NUB1Q9Y5A7 615 aa17.04■□□□□ 0.32
RPAIN-206ENST00000539417 XPOTO43592 962 aaKnown RBP17.03■□□□□ 0.32
RPAIN-206ENST00000539417 AKAP3O75969 853 aa17.03■□□□□ 0.32
RPAIN-206ENST00000539417 NR2F2P24468 414 aa17.03■□□□□ 0.32
RPAIN-206ENST00000539417 POLR2BP30876 1174 aaKnown RBP17.03■□□□□ 0.32
RPAIN-206ENST00000539417 AARSP49588 968 aaKnown RBP eCLIP17.03■□□□□ 0.32
RPAIN-206ENST00000539417 NFIL3Q16649 462 aa17.03■□□□□ 0.32
RPAIN-206ENST00000539417 C1orf220Q5T0J3 134 aa17.03■□□□□ 0.32
RPAIN-206ENST00000539417 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.03■□□□□ 0.32
RPAIN-206ENST00000539417 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.03■□□□□ 0.32
RPAIN-206ENST00000539417 PIK3R5Q8WYR1 880 aa17.03■□□□□ 0.32
RPAIN-206ENST00000539417 APOL5Q9BWW9 433 aa17.03■□□□□ 0.32
RPAIN-206ENST00000539417 CDH22Q9UJ99 828 aa17.03■□□□□ 0.32
RPAIN-206ENST00000539417 LRRIQ3A6PVS8 624 aaPredicted RBP17.02■□□□□ 0.32
RPAIN-206ENST00000539417 SPATA31D3P0C874 917 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 KLRC2P26717 231 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 NDUFV1P49821 464 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 CLCN4P51793 760 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 ELAVL2Q12926 359 aaKnown RBP17.02■□□□□ 0.32
RPAIN-206ENST00000539417 PSMD5Q16401 504 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 VARS2Q5ST30 1063 aaKnown RBP17.02■□□□□ 0.32
RPAIN-206ENST00000539417 SPATA31D4Q6ZUB0 917 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 PALB2Q86YC2 1186 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 PPP2R3CQ969Q6 453 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 ELMO3Q96BJ8 720 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 MSLNLQ96KJ4 702 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 CDCA3Q99618 268 aaPredicted RBP17.02■□□□□ 0.32
RPAIN-206ENST00000539417 CGRRF1Q99675 332 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 STK39Q9UEW8 545 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 COG5Q9UP83 839 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 AGAP1Q9UPQ3 857 aa17.02■□□□□ 0.32
RPAIN-206ENST00000539417 TSC2P49815 1807 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 M0QZQ0 153 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 KIF20AO95235 890 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 CST3P01034 146 aaPredicted RBP17.01■□□□□ 0.31
RPAIN-206ENST00000539417 ADAM9Q13443 819 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 MRPL58Q14197 206 aaKnown RBP17.01■□□□□ 0.31
RPAIN-206ENST00000539417 MYBPC2Q14324 1141 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 KLHL10Q6JEL2 608 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 SYCE2Q6PIF2 218 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 NT5DC4Q86YG4 428 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 WDR49Q8IV35 697 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 CSGALNACT2Q8N6G5 542 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 C12orf76Q8N812 135 aaPredicted RBP17.01■□□□□ 0.31
RPAIN-206ENST00000539417 PARD3BQ8TEW8 1205 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 SENP8Q96LD8 212 aa17.01■□□□□ 0.31
RPAIN-206ENST00000539417 DUSP9Q99956 384 aaKnown RBP17.01■□□□□ 0.31
RPAIN-206ENST00000539417 EMILIN2Q9BXX0 1053 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms