RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CCSER1Q9C0I3 900 aa13.71□□□□□ -0.21
CLSTN3-208ENST00000538933 NDRG2Q9UN36 371 aaKnown RBP13.71□□□□□ -0.21
CLSTN3-208ENST00000538933 WASF3Q9UPY6 502 aa13.71□□□□□ -0.21
CLSTN3-208ENST00000538933 COL4A3BPQ9Y5P4 624 aa13.71□□□□□ -0.21
CLSTN3-208ENST00000538933 BPTFQ12830 3046 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 K7ESF4 209 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 EML1O00423 815 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 MAN2B1O00754 1011 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 SLC26A4O43511 780 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 SRGAP2CP0DJJ0 459 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 CHRNB1P11230 501 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 CNR2P34972 360 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 CXCL12P48061 93 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 FAM160A1Q05DH4 1040 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 SPIRE1Q08AE8 756 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 PPP2R5DQ14738 602 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 SF3A2Q15428 464 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 SLC5A9Q2M3M2 681 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 LIN9Q5TKA1 542 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 RRAGBQ5VZM2 374 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 UNQ6494/PRO21346Q6UXR6 183 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 TPH2Q8IWU9 490 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 CEP57L1Q8IYX8 460 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 ING5Q8WYH8 240 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 PIK3R5Q8WYR1 880 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 DHX58Q96C10 678 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 MCRS1Q96EZ8 462 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 PLIN2Q99541 437 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 PAAF1Q9BRP4 392 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 TUFT1Q9NNX1 390 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 GDE1Q9NZC3 331 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 CACNG4Q9UBN1 327 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 POLIQ9UNA4 740 aa13.7□□□□□ -0.22
CLSTN3-208ENST00000538933 POLR2DO15514 142 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 XYLBO75191 536 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 NR1I2O75469 434 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 KCNK5O95279 499 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 PAPSS2O95340 614 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 HOXC13P31276 330 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 NDUFA8P51970 172 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 LAMTOR4Q0VGL1 99 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 CTTNQ14247 550 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 KARSQ15046 597 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 UVSSAQ2YD98 709 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 PABPC1LQ4VXU2 614 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 USP49Q70CQ1 688 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 MAP4K3Q8IVH8 894 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 IQUBQ8NA54 791 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 SLC7A14Q8TBB6 771 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 SYAP1Q96A49 352 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 DYDC2Q96IM9 177 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 LSM14BQ9BX40 385 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 TRPV5Q9NQA5 729 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 AVENQ9NQS1 362 aaPredicted RBP13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 GIT1Q9Y2X7 761 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 EML5Q05BV3 1969 aa13.69□□□□□ -0.22
CLSTN3-208ENST00000538933 SOBPA7XYQ1 873 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 TSPAN1O60635 241 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 ZNF202O95125 648 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 P4HBP07237 508 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 ZNF806P0C7X5 589 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 LIG1P18858 919 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 PLCG1P19174 1290 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 RPA1P27694 616 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 QARSP47897 775 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 NPEPPSP55786 919 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 RAB33AQ14088 237 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 PSMD5Q16401 504 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 WDR44Q5JSH3 913 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 STPG1Q5TH74 334 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 PLA2G4FQ68DD2 849 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 LRSAM1Q6UWE0 723 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 LONP2Q86WA8 852 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 SPEM1Q8N4L4 309 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 FAM3CQ92520 227 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 TMEM143Q96AN5 459 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 LXNQ9BS40 222 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 TTPALQ9BTX7 342 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 POLR3CQ9BUI4 534 aaPredicted RBP13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 GOLPH3LQ9H4A5 285 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 DHX33Q9H6R0 707 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 ZSWIM4Q9H7M6 989 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 DDX19AQ9NUU7 478 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 C2orf42Q9NWW7 574 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 USP25Q9UHP3 1055 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 HOOK1Q9UJC3 728 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 KIAA1024Q9UPX6 916 aa13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 MRPS23Q9Y3D9 190 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-208ENST00000538933 ARID2Q68CP9 1835 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 MED24O75448 989 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 TADA2AO75478 443 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 CEBPBP17676 345 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 MUTP22033 750 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 PSMC5P62195 406 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 GRM2Q14416 872 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 HSP90AA2PQ14568 343 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 RTL10Q7L3V2 364 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 CATSPER3Q86XQ3 398 aa13.67□□□□□ -0.22
CLSTN3-208ENST00000538933 JPH2Q9BR39 696 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms