RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 TUBA8Q9NY65 449 aaPredicted RBP10.44□□□□□ -0.74
COL4A6-208ENST00000538570 SNX12Q9UMY4 172 aa10.44□□□□□ -0.74
COL4A6-208ENST00000538570 RWDD3Q9Y3V2 267 aa10.44□□□□□ -0.74
COL4A6-208ENST00000538570 P4HA2O15460 535 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 ENO3P13929 434 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 SULT1E1P49888 294 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 SERPINB9P50453 376 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 SESN2P58004 480 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 TRIM63Q969Q1 353 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 EME1Q96AY2 570 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 KIF12Q96FN5 646 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 RGL1Q9NZL6 768 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 LIMA1Q9UHB6 759 aaKnown RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 UTYO14607 1347 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 TRIM49P0CI25 452 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 TRIM49CP0CI26 452 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 NKX1-1Q15270 411 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 KBTBD12Q3ZCT8 623 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 CYB5D1Q6P9G0 228 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 CDR2LQ86X02 465 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 POLD4Q9HCU8 107 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 ERBB3P21860 1342 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 PRR36Q9H6K5 1346 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 MAGEA13PA6NCF6 341 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 STK25O00506 426 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 P3H1Q32P28 736 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 DALRD3Q5D0E6 543 aaKnown RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 PRUNE1Q86TP1 453 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 RBM46Q8TBY0 533 aaKnown RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 CEP95Q96GE4 821 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 RPAP3Q9H6T3 665 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 PSMC3IPQ9P2W1 217 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 TJP2Q9UDY2 1190 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 CCDC78A2IDD5 438 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 PHF20L1A8MW92 1017 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 MYO1GB0I1T2 1018 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 H7C1W4 665 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 LCA5LO95447 670 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 ELMO2Q96JJ3 720 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 ZFYVE1Q9HBF4 777 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 C3orf70A6NLC5 250 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 SLC16A3O15427 465 aaKnown RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 CYP26A1O43174 497 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 KLHL2O95198 593 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 HIST1H2AGP0C0S8 130 aaPredicted RBP10.43□□□□□ -0.74
COL4A6-208ENST00000538570 ITIH2P19823 946 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 HIST1H2ADP20671 130 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 DEFA1P59665 94 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 DEFA3P59666 94 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 RUNX1T1Q06455 604 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 PCYOX1LQ8NBM8 494 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 HIST1H2AHQ96KK5 128 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 TNIP3Q96KP6 325 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 HIST1H2AJQ99878 128 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 H2AFJQ9BTM1 129 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 BRD8Q9H0E9 1235 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 CPVLQ9H3G5 476 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 PPCSQ9HAB8 311 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 RNF146Q9NTX7 359 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 PRELID1Q9Y255 219 aa10.43□□□□□ -0.74
COL4A6-208ENST00000538570 CYP2E1P05181 493 aaPredicted RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 NLRP11P59045 1033 aaKnown RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 KCNB1Q14721 858 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 COBLL1Q53SF7 1204 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 TRPM8Q7Z2W7 1104 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 KIF2BQ8N4N8 673 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 MRPS26Q9BYN8 205 aaKnown RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 CDYLQ9Y232 598 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 NMT2O60551 498 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 KRT6AP02538 564 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 KRT6BP04259 564 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 LSP1P33241 339 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 KRT6CP48668 564 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 SYTL3Q4VX76 610 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 MB21D2Q8IYB1 491 aaPredicted RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 ADGRF4Q8IZF3 695 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 BTN2A2Q8WVV5 523 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 MASTLQ96GX5 879 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 ZNF335Q9H4Z2 1342 aaPredicted RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 ORC4O43929 436 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 MYCP01106 439 aaPredicted RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 UGP2Q16851 508 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 CCT7Q99832 543 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 KCNF1Q9H3M0 494 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 XPO7Q9UIA9 1087 aaKnown RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 ABT1Q9ULW3 272 aaKnown RBP10.42□□□□□ -0.74
COL4A6-208ENST00000538570 CLCA2Q9UQC9 943 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 PCDHGA3Q9Y5H0 932 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 MYO3BQ8WXR4 1341 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 PTCH1Q13635 1447 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 RSPH10B2B2RC85 870 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 RSPH10BP0C881 870 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 MYL2P10916 166 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 FCER1AP12319 257 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 CPB1P15086 417 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 USP11P51784 963 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 LONRF1Q17RB8 773 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 C6orf10Q5SRN2 563 aa10.42□□□□□ -0.74
COL4A6-208ENST00000538570 AGBL2Q5U5Z8 902 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms