RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ABLIM3O94929 683 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 TWF1Q12792 350 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 SPDYCQ5MJ68 293 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 SLC8B1Q6J4K2 584 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 SYNE3Q6ZMZ3 975 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 GALNT15Q8N3T1 639 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 GSTCDQ8NEC7 633 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 SHKBP1Q8TBC3 707 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 IGDCC4Q8TDY8 1250 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 ZFYVE19Q96K21 471 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 CEP89Q96ST8 783 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 PAAF1Q9BRP4 392 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 TPSD1Q9BZJ3 242 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 POLMQ9NP87 494 aaPredicted RBP10.15□□□□□ -0.78
USP28-205ENST00000537706 CACNG4Q9UBN1 327 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 MBD1Q9UIS9 605 aaPredicted RBP10.15□□□□□ -0.78
USP28-205ENST00000537706 SDK1Q7Z5N4 2213 aa10.15□□□□□ -0.78
USP28-205ENST00000537706 E9PAM4 449 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 TMEM189-UBE2V1I3L0A0 370 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 RRP8O43159 456 aaKnown RBP10.15□□□□□ -0.79
USP28-205ENST00000537706 MOSPD3O75425 235 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 B3GAT3O94766 335 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 EGFP01133 1207 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 CLK2P49760 499 aaKnown RBP10.15□□□□□ -0.79
USP28-205ENST00000537706 TAF1BQ53T94 588 aaPredicted RBP10.15□□□□□ -0.79
USP28-205ENST00000537706 TMTC3Q6ZXV5 915 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 MINDY1Q8N5J2 469 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 SPRYD3Q8NCJ5 442 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 TMEM143Q96AN5 459 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 RSPRY1Q96DX4 576 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 DDX27Q96GQ7 796 aaKnown RBP10.15□□□□□ -0.79
USP28-205ENST00000537706 CNOT6LQ96LI5 555 aaKnown RBP10.15□□□□□ -0.79
USP28-205ENST00000537706 UROC1Q96N76 676 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 FCRL3Q96P31 734 aaPredicted RBP10.15□□□□□ -0.79
USP28-205ENST00000537706 SH2D3AQ9BRG2 576 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 PI4K2AQ9BTU6 479 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 UNC45AQ9H3U1 944 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 PRORYQ9H606 182 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 SLC12A7Q9Y666 1083 aa10.15□□□□□ -0.79
USP28-205ENST00000537706 ASPMQ8IZT6 3477 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 DOCK6Q96HP0 2047 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 WISP1O95388 367 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 BCKDHBP21953 392 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 TKTP29401 623 aaKnown RBP10.14□□□□□ -0.79
USP28-205ENST00000537706 PSMC5P62195 406 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 CYP4A11Q02928 519 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 MXD4Q14582 209 aaPredicted RBP10.14□□□□□ -0.79
USP28-205ENST00000537706 ARMCX6Q7L4S7 300 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 TMPRSS7Q7RTY8 843 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 PNPLA1Q8N8W4 532 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 CEP170P1Q96L14 293 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 P2RY13Q9BPV8 354 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 KIAA1522Q9P206 1035 aaPredicted RBP10.14□□□□□ -0.79
USP28-205ENST00000537706 HELZ2Q9BYK8 2649 aaKnown RBP10.14□□□□□ -0.79
USP28-205ENST00000537706 NCANO14594 1321 aa10.14□□□□□ -0.79
USP28-205ENST00000537706 A0A1W2PRU2 124 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 TMEM150BA6NC51 233 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 SH3BP5O60239 455 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 PRKCBP05771 671 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 SERPINF2P08697 491 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 CD59P13987 128 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 EPHB3P54753 998 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 TNK2Q07912 1038 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 SRSF1Q07955 248 aaKnown RBP eCLIP10.13□□□□□ -0.79
USP28-205ENST00000537706 RUNX3Q13761 415 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 TMEM132AQ24JP5 1023 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 GPR155Q7Z3F1 870 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 FERMT3Q86UX7 667 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 TTC30AQ86WT1 665 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 NAXDQ8IW45 347 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 PDCD7Q8N8D1 485 aaKnown RBP10.13□□□□□ -0.79
USP28-205ENST00000537706 CCDC12Q8WUD4 166 aaPredicted RBP10.13□□□□□ -0.79
USP28-205ENST00000537706 GCNAQ96QF7 691 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 DNAAF2Q9NVR5 837 aaKnown RBP10.13□□□□□ -0.79
USP28-205ENST00000537706 RBM28Q9NW13 759 aaKnown RBP10.13□□□□□ -0.79
USP28-205ENST00000537706 AFF4Q9UHB7 1163 aaKnown RBP10.13□□□□□ -0.79
USP28-205ENST00000537706 RCAN3Q9UKA8 241 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 NAV2Q8IVL1 2488 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 NOTCH4Q99466 2003 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 TRABD2BA6NFA1 517 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 E7EWF7 191 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 CIITAP33076 1130 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 PTENP60484 403 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 ANO7Q6IWH7 933 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 FANCBQ8NB91 859 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 TMEM87BQ96K49 555 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 ARID3AQ99856 593 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 ATXN3LQ9H3M9 355 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 C6orf50Q9HD87 102 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 BARHL2Q9NY43 387 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 CEP72Q9P209 647 aa10.13□□□□□ -0.79
USP28-205ENST00000537706 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 FAM205CA6NFA0 338 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 ARHGAP33O14559 1287 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 MARCH6O60337 910 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 SEC24AO95486 1093 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 ARF4P18085 180 aaPredicted RBP10.12□□□□□ -0.79
USP28-205ENST00000537706 RXRAP19793 462 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 POU5F1BQ06416 359 aa10.12□□□□□ -0.79
USP28-205ENST00000537706 GPR158Q5T848 1215 aa10.12□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms