RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 BORCS6Q96GS4 357 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 ASB2Q96Q27 587 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 MKNK1Q9BUB5 465 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 APOL6Q9BWW8 343 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 NFKBIZQ9BYH8 718 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 NUCKS1Q9H1E3 243 aaKnown RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 MYO1AQ9UBC5 1043 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 IPPQ9Y573 584 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 ZC3H11AO75152 810 aaKnown RBP eCLIP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 EIF4A3P38919 411 aaKnown RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 CYP2J2P51589 502 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 MRPS5P82675 430 aaKnown RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 CDCA2Q69YH5 1023 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 NOTUMQ6P988 496 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 ADGRD2Q7Z7M1 963 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 ZNF280BQ86YH2 543 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 LRRN4CLQ8ND94 238 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 ATXN2LQ8WWM7 1075 aaKnown RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 ANKRD7Q92527 254 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 SYN2Q92777 582 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 GANQ9H2C0 597 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 NXF3Q9H4D5 531 aaKnown RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 TBC1D13Q9NVG8 400 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 DMAC2Q9NW81 257 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 TRIM10Q9UDY6 481 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 GUCA1BQ9UMX6 200 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 FRMD4BQ9Y2L6 1034 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 FNDC1Q4ZHG4 1894 aaPredicted RBP12.89□□□□□ -0.35
CLIP1-208ENST00000537004 NLRC5Q86WI3 1866 aa12.89□□□□□ -0.35
CLIP1-208ENST00000537004 KCNA5P22460 613 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 RAB27AP51159 221 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 KIF11P52732 1056 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 ERVFC1P60507 584 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 CYP27A1Q02318 531 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 EXOC3L4Q17RC7 722 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 NOMO2Q5JPE7 1267 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 CCDC122Q5T0U0 273 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 SFMBT2Q5VUG0 894 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 GLB1LQ6UWU2 654 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 ZNF662Q6ZS27 426 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 HAUS6Q7Z4H7 955 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 RBM23Q86U06 439 aaKnown RBP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 SLC9A9Q8IVB4 645 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 SLC35F6Q8N357 371 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 DEPTORQ8TB45 409 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 JAKMIP2Q96AA8 810 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 ACCSQ96QU6 501 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 FZD8Q9H461 694 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 ST6GALNAC4Q9H4F1 302 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 NSUN3Q9H649 340 aaKnown RBP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 IGFLR1Q9H665 355 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 TMEM206Q9H813 350 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 PLCB1Q9NQ66 1216 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 AAASQ9NRG9 546 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 DNAJB4Q9UDY4 337 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 TFR2Q9UP52 801 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 MRFAP1Q9Y605 127 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 V9GYY5 206 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 H3BQ06 376 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 ZNF263O14978 683 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 NPTXRO95502 500 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 POMCP01189 267 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 SKIP12755 728 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 LAG3P18627 525 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 SLC9A1P19634 815 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 AKAP5P24588 427 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 PON1P27169 355 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 NAMPTP43490 491 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 PEX3P56589 373 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 BCAR1P56945 870 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 HYAL1Q12794 435 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 SPA17Q15506 151 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 TIGD5Q53EQ6 642 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 TJAP1Q5JTD0 557 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 HGSNATQ68CP4 663 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 DPY19L2P1Q6NXN4 242 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 GBP6Q6ZN66 633 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 MRPL10Q7Z7H8 261 aaKnown RBP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 GPIHBP1Q8IV16 184 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 ZBTB8OSQ8IWT0 167 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 MICAL1Q8TDZ2 1067 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 ZFP42Q96MM3 310 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 NECAB3Q96P71 396 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 DEF6Q9H4E7 631 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 UBE2ZQ9H832 354 aaPredicted RBP12.88□□□□□ -0.35
CLIP1-208ENST00000537004 RSAD1Q9HA92 442 aa12.88□□□□□ -0.35
CLIP1-208ENST00000537004 A0A1B0GUA9 196 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 GTPBP10A4D1E9 387 aaKnown RBP12.87□□□□□ -0.35
CLIP1-208ENST00000537004 CTAGE9A4FU28 777 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 CCDC169A6NNP5 214 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 PER2O15055 1255 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 SLC16A4O15374 487 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 KRT86O43790 486 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 AKR1B10O60218 316 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 DDHD2O94830 711 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 LCA5LO95447 670 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 PRKCBP05771 671 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 MLH1P40692 756 aa12.87□□□□□ -0.35
CLIP1-208ENST00000537004 NPTX2P47972 431 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms