RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PRKD2Q9BZL6 878 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 ST7Q9NRC1 585 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 FNIP2Q9P278 1114 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 RWDD2AQ9UIY3 292 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 PRG3Q9Y2Y8 225 aaPredicted RBP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 ADGRG1Q9Y653 693 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 LRRC10BA6NIK2 292 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 SPTLC1O15269 473 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 GAS2O43903 313 aaKnown RBP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 DKC1O60832 514 aaKnown RBP eCLIP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 TADA3O75528 432 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 HOXA11P31270 313 aaPredicted RBP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 ARHGAP29Q52LW3 1261 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 DTHD1Q6ZMT9 781 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 GET4Q7L5D6 327 aaPredicted RBP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 MAML2Q8IZL2 1156 aaPredicted RBP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 DCLK2Q8N568 766 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 SMG8Q8ND04 991 aaKnown RBP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 HPS3Q969F9 1004 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 MBOAT7Q96N66 472 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 PANX2Q96RD6 677 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 SH2D3AQ9BRG2 576 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 LZTFL1Q9NQ48 299 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 CHST7Q9NS84 486 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 LIMA1Q9UHB6 759 aaKnown RBP8.97□□□□□ -0.97
NEDD8-207ENST00000533242 FBXO4Q9UKT5 387 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 NUMBLQ9Y6R0 609 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 CFAP54Q96N23 3096 aa8.97□□□□□ -0.97
NEDD8-207ENST00000533242 POTEMA6NI47 508 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 KCNJ18B7U540 433 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 ASAP2O43150 1006 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 ZSCAN12O43309 604 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 PLCG1P19174 1290 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 FSHRP23945 695 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 AXLP30530 894 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 RFC5P40937 340 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 MAGEA9P43362 315 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 CLCN6P51797 869 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 COPB1P53618 953 aaKnown RBP8.96□□□□□ -0.97
NEDD8-207ENST00000533242 KCNJ12Q14500 433 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 PCBP1Q15365 356 aaKnown RBP eCLIP8.96□□□□□ -0.97
NEDD8-207ENST00000533242 TCP11X2Q5H9J9 407 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 CT47A1Q5JQC4 288 aaPredicted RBP8.96□□□□□ -0.97
NEDD8-207ENST00000533242 PLA2G4FQ68DD2 849 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 LILRA6Q6PI73 481 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 POTEGQ6S5H5 508 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 MOXD1Q6UVY6 613 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 PALB2Q86YC2 1186 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 ACRBPQ8NEB7 543 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 ETNPPLQ8TBG4 499 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 TBCKQ8TEA7 893 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 TCP11Q8WWU5 503 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 PSPC1Q8WXF1 523 aaKnown RBP8.96□□□□□ -0.97
NEDD8-207ENST00000533242 SLC7A3Q8WY07 619 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 MMTAG2Q9BU76 263 aaKnown RBP8.96□□□□□ -0.97
NEDD8-207ENST00000533242 DDX23Q9BUQ8 820 aaKnown RBP8.96□□□□□ -0.97
NEDD8-207ENST00000533242 FOXQ1Q9C009 403 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 MINDY3Q9H8M7 445 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 KBTBD4Q9NVX7 518 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 IPPQ9Y573 584 aa8.96□□□□□ -0.97
NEDD8-207ENST00000533242 ZMYM2Q9UBW7 1377 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 ARL5CA6NH57 179 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 N4BP3O15049 544 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 TGM5O43548 720 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 CCNT1O60563 726 aaKnown RBP8.96□□□□□ -0.98
NEDD8-207ENST00000533242 ZMYND10O75800 440 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 TDP2O95551 362 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 SPATA31D3P0C874 917 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 SRGAP2CP0DJJ0 459 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 MYBP10242 640 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 GLULP15104 373 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 PRKCQQ04759 706 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 LAMTOR4Q0VGL1 99 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 RSPO2Q6UXX9 243 aaPredicted RBP8.96□□□□□ -0.98
NEDD8-207ENST00000533242 SPATA31D4Q6ZUB0 917 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 PRPF31Q8WWY3 499 aaKnown RBP8.96□□□□□ -0.98
NEDD8-207ENST00000533242 CCDC34Q96HJ3 373 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 BCO2Q9BYV7 579 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 OSBPL6Q9BZF3 934 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 DHX33Q9H6R0 707 aaKnown RBP8.96□□□□□ -0.98
NEDD8-207ENST00000533242 NCDNQ9UBB6 729 aa8.96□□□□□ -0.98
NEDD8-207ENST00000533242 KANSL1LA0AUZ9 987 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 CCP110O43303 1012 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 ERLIN2O94905 339 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 QARSP47897 775 aaKnown RBP8.95□□□□□ -0.98
NEDD8-207ENST00000533242 MLF2Q15773 248 aaPredicted RBP8.95□□□□□ -0.98
NEDD8-207ENST00000533242 USP41Q3LFD5 358 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 VARS2Q5ST30 1063 aaKnown RBP8.95□□□□□ -0.98
NEDD8-207ENST00000533242 FUT10Q6P4F1 479 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 MTSS1LQ765P7 747 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 TMEM143Q96AN5 459 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 DOCK6Q96HP0 2047 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 CNTNAP3BQ96NU0 1288 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 GAD1Q99259 594 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 CHP1Q99653 195 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 CNTNAP3Q9BZ76 1288 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 CCSER1Q9C0I3 900 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 SPATA6Q9NWH7 488 aaPredicted RBP8.95□□□□□ -0.98
NEDD8-207ENST00000533242 MIOSQ9NXC5 875 aa8.95□□□□□ -0.98
NEDD8-207ENST00000533242 FAM53CQ9NYF3 392 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms