RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 SMTNL1A8MU46 457 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 F8W810 466 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 GRM6O15303 877 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 CAVIN2O95810 425 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 C4BPAP04003 597 aaKnown RBP12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 TRIM49P0CI25 452 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 TRIM49CP0CI26 452 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 PNPLA4P41247 253 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 ZNF165P49910 485 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 MARSP56192 900 aaKnown RBP12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 LILRA4P59901 499 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 MYL5Q02045 173 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 MYO1EQ12965 1108 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 DCAF17Q5H9S7 520 aaPredicted RBP12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 FAM171A1Q5VUB5 890 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 PDE12Q6L8Q7 609 aaKnown RBP12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 FUT10Q6P4F1 479 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 SV2AQ7L0J3 742 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 TMC7Q7Z402 723 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 VPS52Q8N1B4 723 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 BCL7CQ8WUZ0 217 aaPredicted RBP12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 BPIFA3Q9BQP9 254 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 GPR62Q9BZJ7 368 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 MMRN2Q9H8L6 949 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 SSX2IPQ9Y2D8 614 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 NFE2L3Q9Y4A8 694 aa12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 FNDC1Q4ZHG4 1894 aaPredicted RBP12.12□□□□□ -0.47
TRAPPC4-211ENST00000533012 BECN2A8MW95 431 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 KPNA7A9QM74 516 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 LPXNO60711 386 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 CXCL14O95715 111 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 CST3P01034 146 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 SOD2P04179 222 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 IGFBP6P24592 240 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 BRCC3P46736 316 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 GCLMP48507 274 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TAF6P49848 677 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 PPP3CAQ08209 521 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 SGSM1Q2NKQ1 1148 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 USP41Q3LFD5 358 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 ZACNQ401N2 412 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 SV2CQ496J9 727 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TIGD5Q53EQ6 642 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 C1orf220Q5T0J3 134 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TDRD10Q5VZ19 366 aaKnown RBP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 KRT39Q6A163 491 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 KIAA1841Q6NSI8 718 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 CD300LGQ6UXG3 332 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 DSTYKQ6XUX3 929 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 Q7L0L9 218 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TAS1R1Q7RTX1 841 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 CEP57Q86XR8 500 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 IRF2BP1Q8IU81 584 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TMEM130Q8N3G9 435 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 LRRC52Q8N7C0 313 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 C3orf58Q8NDZ4 430 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 FAM84AQ96KN4 292 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 CNOT6LQ96LI5 555 aaKnown RBP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 ZNF560Q96MR9 790 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 GAS2L1Q99501 681 aaPredicted RBP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TMEM8AQ9HCN3 771 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 NGRNQ9NPE2 291 aaKnown RBP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TLR9Q9NR96 1032 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 SAMSN1Q9NSI8 373 aaKnown RBP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 FANCLQ9NW38 375 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 LMCD1Q9NZU5 365 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 SIX4Q9UIU6 781 aa12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.11□□□□□ -0.47
TRAPPC4-211ENST00000533012 TRIOBPQ9H2D6 2365 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 ARHGEF37A1IGU5 675 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 I3L4J1 428 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 PPEF2O14830 753 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 SYN3O14994 580 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 EFEMP2O95967 443 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 CTSAP10619 480 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 CDK11BP21127 795 aaKnown RBP12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 IGFBP4P22692 258 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 DNAJB1P25685 340 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 ATICP31939 592 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 MTIF2P46199 727 aaKnown RBP12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 ERVFC1P60507 584 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 CETN1Q12798 172 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 NCOA4Q13772 614 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 LRSAM1Q6UWE0 723 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 C15orf39Q6ZRI6 1047 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 TRIM59Q8IWR1 403 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 CCDC150Q8NCX0 1101 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 APPL2Q8NEU8 664 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 CXorf38Q8TB03 319 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 GDPD5Q8WTR4 605 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 SLC35C1Q96A29 364 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 MRPL38Q96DV4 380 aaKnown RBP12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 HPDLQ96IR7 371 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 SUSD3Q96L08 255 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 SENP8Q96LD8 212 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 CDX2Q99626 313 aaPredicted RBP12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 TCF25Q9BQ70 676 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 TTPALQ9BTX7 342 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 HERC2P3Q9BVR0 1158 aa12.1□□□□□ -0.47
TRAPPC4-211ENST00000533012 ENTPD7Q9NQZ7 604 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms