RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 HOOK1Q9UJC3 728 aaKnown RBP21.52■■□□□ 1.04
CPSF1-209ENST00000532725 NUB1Q9Y5A7 615 aa21.52■■□□□ 1.04
CPSF1-209ENST00000532725 PPEF2O14830 753 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 KINO60870 393 aaKnown RBP21.51■■□□□ 1.03
CPSF1-209ENST00000532725 SMC2O95347 1197 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 EPCAMP16422 314 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 TKTP29401 623 aaKnown RBP21.51■■□□□ 1.03
CPSF1-209ENST00000532725 AARSP49588 968 aaKnown RBP eCLIP21.51■■□□□ 1.03
CPSF1-209ENST00000532725 CYP2J2P51589 502 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 SNRNP35Q16560 246 aaKnown RBP21.51■■□□□ 1.03
CPSF1-209ENST00000532725 ANKRD54Q6NXT1 300 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 SLC9A9Q8IVB4 645 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 GUF1Q8N442 669 aaKnown RBP21.51■■□□□ 1.03
CPSF1-209ENST00000532725 RDH13Q8NBN7 331 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 CASP10Q92851 521 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 CLSTN3Q9BQT9 956 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 RMND1Q9NWS8 449 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 CD207Q9UJ71 328 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 MAPK8IP1Q9UQF2 711 aa21.51■■□□□ 1.03
CPSF1-209ENST00000532725 ANK1P16157 1881 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 GRXCR2A6NFK2 248 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 SYN3O14994 580 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 KIF20AO95235 890 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 C1RP00736 705 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 ADH1AP07327 375 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 RPL17P18621 184 aaKnown RBP21.5■■□□□ 1.03
CPSF1-209ENST00000532725 LILRA4P59901 499 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 MRPL58Q14197 206 aaKnown RBP21.5■■□□□ 1.03
CPSF1-209ENST00000532725 CLUL1Q15846 466 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 PUS10Q3MIT2 529 aaKnown RBP21.5■■□□□ 1.03
CPSF1-209ENST00000532725 PDXDC1Q6P996 788 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 SYCE2Q6PIF2 218 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 CACTINQ8WUQ7 758 aaKnown RBP21.5■■□□□ 1.03
CPSF1-209ENST00000532725 SMARCE1Q969G3 411 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 S1PR5Q9H228 398 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 TRAF3IP3Q9Y228 551 aa21.5■■□□□ 1.03
CPSF1-209ENST00000532725 M0QZQ0 153 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 SRGAP2BP0DMP2 458 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 HOXB8P17481 243 aaPredicted RBP21.49■■□□□ 1.03
CPSF1-209ENST00000532725 MCM4P33991 863 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 TFAMQ00059 246 aaKnown RBP21.49■■□□□ 1.03
CPSF1-209ENST00000532725 CREMQ03060 361 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 MYBPC2Q14324 1141 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 SURF1Q15526 300 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 PSMD5Q16401 504 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 ZNF658Q5TYW1 1059 aaPredicted RBP21.49■■□□□ 1.03
CPSF1-209ENST00000532725 PTCRAQ6ISU1 281 aaPredicted RBP21.49■■□□□ 1.03
CPSF1-209ENST00000532725 LILRA6Q6PI73 481 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 SMRP1Q8NCR6 262 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 CXorf38Q8TB03 319 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 MFSD14AQ96MC6 490 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 BACE2Q9Y5Z0 518 aa21.49■■□□□ 1.03
CPSF1-209ENST00000532725 VCANP13611 3396 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 TULP1O00294 542 aaPredicted RBP21.48■■□□□ 1.03
CPSF1-209ENST00000532725 SPTLC1O15269 473 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 MBTPS2O43462 519 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 TBC1D4O60343 1298 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 EXOC3O60645 756 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 PAX3P23760 479 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 CYP24A1Q07973 514 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 SCARA3Q6AZY7 606 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 RSPO2Q6UXX9 243 aaPredicted RBP21.48■■□□□ 1.03
CPSF1-209ENST00000532725 ANKS3Q6ZW76 656 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 PALB2Q86YC2 1186 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 SMYD4Q8IYR2 804 aaPredicted RBP21.48■■□□□ 1.03
CPSF1-209ENST00000532725 C1orf127Q8N9H9 656 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 FAM84AQ96KN4 292 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 INTS13Q9NVM9 706 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 MTRRQ9UBK8 725 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 PCDHB8Q9UN66 801 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 VWA8A3KMH1 1905 aa21.48■■□□□ 1.03
CPSF1-209ENST00000532725 ADAM12O43184 909 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 CALUO43852 315 aaPredicted RBP21.47■■□□□ 1.03
CPSF1-209ENST00000532725 NR3C1P04150 777 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 PRCPP42785 496 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 SMAD4Q13485 552 aaKnown RBP21.47■■□□□ 1.03
CPSF1-209ENST00000532725 PSMD6Q15008 389 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 NFIL3Q16649 462 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 COBLL1Q53SF7 1204 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 VARS2Q5ST30 1063 aaKnown RBP21.47■■□□□ 1.03
CPSF1-209ENST00000532725 GLYCTKQ8IVS8 523 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 BORCS6Q96GS4 357 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 GZF1Q9H116 711 aaPredicted RBP21.47■■□□□ 1.03
CPSF1-209ENST00000532725 PTPRJQ12913 1337 aa21.47■■□□□ 1.03
CPSF1-209ENST00000532725 TGM5O43548 720 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 GLUD1P00367 558 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 IL9P15248 144 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 RAB33AQ14088 237 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 DUOXA2Q1HG44 320 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 ZCWPW2Q504Y3 356 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 LMBRD2Q68DH5 695 aaPredicted RBP21.46■■□□□ 1.03
CPSF1-209ENST00000532725 APPL2Q8NEU8 664 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 OR5B17Q8NGF7 314 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 POP1Q99575 1024 aaKnown RBP21.46■■□□□ 1.03
CPSF1-209ENST00000532725 GTPBP4Q9BZE4 634 aaKnown RBP21.46■■□□□ 1.03
CPSF1-209ENST00000532725 LMBRD1Q9NUN5 540 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 DZANK1Q9NVP4 752 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 MAN1B1Q9UKM7 699 aa21.46■■□□□ 1.03
CPSF1-209ENST00000532725 TTC28Q96AY4 2481 aa21.45■■□□□ 1.02
CPSF1-209ENST00000532725 OAZ2O95190 189 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms