RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SUSD3Q96L08 255 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 FAM50BQ9Y247 325 aa16.3■□□□□ 0.2
CPSF1-208ENST00000532560 SPTBN5Q9NRC6 3674 aaKnown RBP16.3■□□□□ 0.2
CPSF1-208ENST00000532560 MBTPS2O43462 519 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 GADD45BO75293 160 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-208ENST00000532560 KIF20AO95235 890 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 EPCAMP16422 314 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 PAX3P23760 479 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 TKTP29401 623 aaKnown RBP16.29■□□□□ 0.2
CPSF1-208ENST00000532560 MCM4P33991 863 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 AARSP49588 968 aaKnown RBP eCLIP16.29■□□□□ 0.2
CPSF1-208ENST00000532560 PRSS55Q6UWB4 352 aaPredicted RBP16.29■□□□□ 0.2
CPSF1-208ENST00000532560 CEP57Q86XR8 500 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 CBWD2Q8IUF1 395 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 ADAMTS19Q8TE59 1207 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 TMEM174Q8WUU8 243 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 KCTD10Q9H3F6 313 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 MTRRQ9UBK8 725 aa16.29■□□□□ 0.2
CPSF1-208ENST00000532560 HOOK1Q9UJC3 728 aaKnown RBP16.29■□□□□ 0.2
CPSF1-208ENST00000532560 ANO9A1A5B4 782 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 ZNF233A6NK53 670 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 I3L4J1 428 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 PDXKO00764 312 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 CLIC2O15247 247 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 KINO60870 393 aaKnown RBP16.28■□□□□ 0.2
CPSF1-208ENST00000532560 GLUD1P00367 558 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 UBE2HP62256 183 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 SURF1Q15526 300 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 SMAD2Q15796 467 aaKnown RBP16.28■□□□□ 0.2
CPSF1-208ENST00000532560 SNRNP35Q16560 246 aaKnown RBP16.28■□□□□ 0.2
CPSF1-208ENST00000532560 C9orf57Q5W0N0 161 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 SYCE2Q6PIF2 218 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 CLEC17AQ6ZS10 378 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 ANKS3Q6ZW76 656 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 XXYLT1Q8NBI6 393 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 SPATA20Q8TB22 786 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 NOC3LQ8WTT2 800 aaKnown RBP16.28■□□□□ 0.2
CPSF1-208ENST00000532560 GSDMAQ96QA5 445 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 CLSTN3Q9BQT9 956 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 RMND1Q9NWS8 449 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 DPP3Q9NY33 737 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 BACE2Q9Y5Z0 518 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 PLXNA3P51805 1871 aa16.28■□□□□ 0.2
CPSF1-208ENST00000532560 M0QZQ0 153 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 PIRO00625 290 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 PPEF2O14830 753 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 SMC2O95347 1197 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 IL9P15248 144 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 RPL17P18621 184 aaKnown RBP16.27■□□□□ 0.2
CPSF1-208ENST00000532560 CYP2J2P51589 502 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 ELMSAN1Q6PJG2 1045 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 SLC9A9Q8IVB4 645 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 GUF1Q8N442 669 aaKnown RBP16.27■□□□□ 0.2
CPSF1-208ENST00000532560 APPL2Q8NEU8 664 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 SUSD6Q92537 303 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 S1PR5Q9H228 398 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 SFXN1Q9H9B4 322 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 PDE11AQ9HCR9 933 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 DPP7Q9UHL4 492 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 PCDHB8Q9UN66 801 aa16.27■□□□□ 0.2
CPSF1-208ENST00000532560 USP15Q9Y4E8 981 aaPredicted RBP16.27■□□□□ 0.2
CPSF1-208ENST00000532560 TCF20Q9UGU0 1960 aaKnown RBP16.26■□□□□ 0.19
CPSF1-208ENST00000532560 LILRA4P59901 499 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 TFAMQ00059 246 aaKnown RBP16.26■□□□□ 0.19
CPSF1-208ENST00000532560 ITIH3Q06033 890 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 CYP24A1Q07973 514 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 VARS2Q5ST30 1063 aaKnown RBP16.26■□□□□ 0.19
CPSF1-208ENST00000532560 LILRA6Q6PI73 481 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 HDAC7Q8WUI4 952 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 CACTINQ8WUQ7 758 aaKnown RBP16.26■□□□□ 0.19
CPSF1-208ENST00000532560 SMARCE1Q969G3 411 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 COL25A1Q9BXS0 654 aaPredicted RBP16.26■□□□□ 0.19
CPSF1-208ENST00000532560 GTPBP4Q9BZE4 634 aaKnown RBP16.26■□□□□ 0.19
CPSF1-208ENST00000532560 MAN1C1Q9NR34 630 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 DMAC2Q9NW81 257 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 PRKAG3Q9UGI9 489 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 TRAF3IP3Q9Y228 551 aa16.26■□□□□ 0.19
CPSF1-208ENST00000532560 TSC2P49815 1807 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 H7C4K7 107 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 ADAM12O43184 909 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 TGM5O43548 720 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 CALUO43852 315 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-208ENST00000532560 TBC1D4O60343 1298 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 EXOC3O60645 756 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 NR3C1P04150 777 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 TMEM191BP0C7N4 346 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 PTMSP20962 102 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 MRPL58Q14197 206 aaKnown RBP16.25■□□□□ 0.19
CPSF1-208ENST00000532560 MYBPC2Q14324 1141 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 PSMD6Q15008 389 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 NFIL3Q16649 462 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 COBLL1Q53SF7 1204 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 ZNF280DQ6N043 979 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 WDR49Q8IV35 697 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 GLYCTKQ8IVS8 523 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 C1orf127Q8N9H9 656 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 ZNF560Q96MR9 790 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 UHRF1Q96T88 793 aaPredicted RBP16.25■□□□□ 0.19
CPSF1-208ENST00000532560 MTMR12Q9C0I1 747 aa16.25■□□□□ 0.19
CPSF1-208ENST00000532560 ADAM7Q9H2U9 754 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms