RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 KIAA0319Q5VV43 1072 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 CEP135Q66GS9 1140 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 FILIP1Q7Z7B0 1213 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 FAM186BQ8IYM0 893 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 VPS52Q8N1B4 723 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 OR5B17Q8NGF7 314 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 ZNF516Q92618 1163 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 RABGGTAQ92696 567 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 MTMR12Q9C0I1 747 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 CTNND2Q9UQB3 1225 aa15.64■□□□□ 0.09
CPSF1-206ENST00000531480 LRRIQ3A6PVS8 624 aaPredicted RBP15.63■□□□□ 0.09
CPSF1-206ENST00000531480 M0QZQ0 153 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 PPEF2O14830 753 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 TADA2AO75478 443 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 FGFR3P22607 806 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 IRS1P35568 1242 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 MARSP56192 900 aaKnown RBP15.63■□□□□ 0.09
CPSF1-206ENST00000531480 LILRA4P59901 499 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 TFAMQ00059 246 aaKnown RBP15.63■□□□□ 0.09
CPSF1-206ENST00000531480 BFSP1Q12934 665 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 COL19A1Q14993 1142 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 TIGD5Q53EQ6 642 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 KLHL10Q6JEL2 608 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 CAVIN1Q6NZI2 390 aaKnown RBP15.63■□□□□ 0.09
CPSF1-206ENST00000531480 C15orf39Q6ZRI6 1047 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 TAS1R1Q7RTX1 841 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 LRRC52Q8N7C0 313 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 NOC3LQ8WTT2 800 aaKnown RBP15.63■□□□□ 0.09
CPSF1-206ENST00000531480 CCDC127Q96BQ5 260 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 SUSD3Q96L08 255 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 FNBP1Q96RU3 617 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 POP1Q99575 1024 aaKnown RBP15.63■□□□□ 0.09
CPSF1-206ENST00000531480 DACH1Q9UI36 760 aa15.63■□□□□ 0.09
CPSF1-206ENST00000531480 TRAPPC3O43617 180 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 C4BPAP04003 597 aaKnown RBP15.62■□□□□ 0.09
CPSF1-206ENST00000531480 TMEM191BP0C7N4 346 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 DLATP10515 647 aaKnown RBP15.62■□□□□ 0.09
CPSF1-206ENST00000531480 EPB41P11171 864 aaKnown RBP15.62■□□□□ 0.09
CPSF1-206ENST00000531480 VAMP7P51809 220 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 DLG4P78352 724 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 PTPN14Q15678 1187 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 USP41Q3LFD5 358 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 SCARA3Q6AZY7 606 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.62■□□□□ 0.09
CPSF1-206ENST00000531480 TRAPPC11Q7Z392 1133 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 FRMD5Q7Z6J6 570 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 USP37Q86T82 979 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 MRPL43Q8N983 215 aaKnown RBP15.62■□□□□ 0.09
CPSF1-206ENST00000531480 EEF2KMTQ96G04 330 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 ANKRD36BP1Q96IX9 119 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 FAM84AQ96KN4 292 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 TCF25Q9BQ70 676 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 FUCA2Q9BTY2 467 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 COL25A1Q9BXS0 654 aaPredicted RBP15.62■□□□□ 0.09
CPSF1-206ENST00000531480 NSUN3Q9H649 340 aaKnown RBP15.62■□□□□ 0.09
CPSF1-206ENST00000531480 RXFP1Q9HBX9 757 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 PRUNE2Q8WUY3 3088 aa15.62■□□□□ 0.09
CPSF1-206ENST00000531480 C2orf71A6NGG8 1288 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 SYN3O14994 580 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 SPTLC1O15269 473 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 STAU1O95793 577 aaKnown RBP15.61■□□□□ 0.09
CPSF1-206ENST00000531480 TNNC2P02585 160 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 ITGB3P05106 788 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 TNNI1P19237 187 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 GTF2H1P32780 548 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 PNPLA4P41247 253 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 BRCC3P46736 316 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 GLUD2P49448 558 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 STX17P56962 302 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 RBP5P82980 135 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 MRPL58Q14197 206 aaKnown RBP15.61■□□□□ 0.09
CPSF1-206ENST00000531480 SMC1AQ14683 1233 aaKnown RBP15.61■□□□□ 0.09
CPSF1-206ENST00000531480 ZACNQ401N2 412 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 LMBRD2Q68DH5 695 aaPredicted RBP15.61■□□□□ 0.09
CPSF1-206ENST00000531480 TMC7Q7Z402 723 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 LIMS2Q7Z4I7 341 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 CSGALNACT2Q8N6G5 542 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 HASPINQ8TF76 798 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 PIK3R5Q8WYR1 880 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 TTPALQ9BTX7 342 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 VRTNQ9H8Y1 702 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 METTL14Q9HCE5 456 aaKnown RBP15.61■□□□□ 0.09
CPSF1-206ENST00000531480 GDAP2Q9NXN4 497 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 FNIP2Q9P278 1114 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 SSX2IPQ9Y2D8 614 aa15.61■□□□□ 0.09
CPSF1-206ENST00000531480 HIDE1A8MVS5 230 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 TBC1D4O60343 1298 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 GNA14O95837 355 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 C1RP00736 705 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 KRT13P13646 458 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 IGFBP4P22692 258 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 POLR2BP30876 1174 aaKnown RBP15.6■□□□□ 0.09
CPSF1-206ENST00000531480 TAF6P49848 677 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 KCNC3Q14003 757 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 STX1AQ16623 288 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 RTP2Q5QGT7 225 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 FAM171A1Q5VUB5 890 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 TDRD10Q5VZ19 366 aaKnown RBP15.6■□□□□ 0.09
CPSF1-206ENST00000531480 SASS6Q6UVJ0 657 aa15.6■□□□□ 0.09
CPSF1-206ENST00000531480 IRF2BP1Q8IU81 584 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms