RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CXCL8P10145 99 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 NCOA4Q13772 614 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 ARHGAP44Q17R89 818 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 ARHGAP29Q52LW3 1261 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 C10orf76Q5T2E6 689 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 TSPAN18Q96SJ8 248 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 RPS6KA5O75582 802 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 VNN1O95497 513 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 TBXAS1P24557 533 aaPredicted RBP22.79■■□□□ 1.24
VPS28-212ENST00000530836 CD52P31358 61 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 SLC18A3Q16572 532 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 TCTN1Q2MV58 587 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 SHC3Q92529 594 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 APBB2Q92870 758 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 FAXDC2Q96IV6 333 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 TSGA10Q9BZW7 698 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 TRIM6Q9C030 488 aaPredicted RBP22.79■■□□□ 1.24
VPS28-212ENST00000530836 PADI3Q9ULW8 664 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 PIN4Q9Y237 131 aaKnown RBP22.79■■□□□ 1.24
VPS28-212ENST00000530836 DERAQ9Y315 318 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 C2CD2Q9Y426 696 aa22.79■■□□□ 1.24
VPS28-212ENST00000530836 LACTBL1A8MY62 500 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 FOXN3O00409 490 aaPredicted RBP22.78■■□□□ 1.24
VPS28-212ENST00000530836 GPR182O15218 404 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 NPTXRO95502 500 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 YARSP54577 528 aaKnown RBP22.78■■□□□ 1.24
VPS28-212ENST00000530836 TFAMQ00059 246 aaKnown RBP22.78■■□□□ 1.24
VPS28-212ENST00000530836 PTK2Q05397 1052 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 PAK2Q13177 524 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 TRPC3Q13507 836 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 BMS1Q14692 1282 aaKnown RBP22.78■■□□□ 1.24
VPS28-212ENST00000530836 SHHQ15465 462 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 SGSM1Q2NKQ1 1148 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 C9orf50Q5SZB4 431 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 OTOP2Q7RTS6 562 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 KIAA1328Q86T90 577 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 HERVK_113Q902F9 699 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 TAF4BQ92750 862 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 MTMR12Q9C0I1 747 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 CHST12Q9NRB3 414 aa22.78■■□□□ 1.24
VPS28-212ENST00000530836 REXO2Q9Y3B8 237 aaKnown RBP22.78■■□□□ 1.24
VPS28-212ENST00000530836 TANC1Q9C0D5 1861 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 KRT86O43790 486 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 VAV2P52735 878 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 IKBKEQ14164 716 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 SLC10A6Q3KNW5 377 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 FAM43BQ6ZT52 329 aaPredicted RBP22.77■■□□□ 1.24
VPS28-212ENST00000530836 FAM228AQ86W67 206 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 TMEM192Q8IY95 271 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 FAM71AQ8IYT1 594 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 ERVK-5Q9HDB9 667 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 MYO1AQ9UBC5 1043 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 ST3GAL5Q9UNP4 418 aa22.77■■□□□ 1.24
VPS28-212ENST00000530836 ABHD14A-ACY1A0A1B0GW23 586 aa22.76■■□□□ 1.23
VPS28-212ENST00000530836 LRRN2O75325 713 aa22.76■■□□□ 1.23
VPS28-212ENST00000530836 ETF1P62495 437 aaKnown RBP22.76■■□□□ 1.23
VPS28-212ENST00000530836 NFX1Q12986 1120 aaKnown RBP22.76■■□□□ 1.23
VPS28-212ENST00000530836 EFCAB13Q8IY85 973 aa22.76■■□□□ 1.23
VPS28-212ENST00000530836 KREMEN1Q96MU8 473 aa22.76■■□□□ 1.23
VPS28-212ENST00000530836 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP22.76■■□□□ 1.23
VPS28-212ENST00000530836 COLQQ9Y215 455 aaPredicted RBP22.76■■□□□ 1.23
VPS28-212ENST00000530836 PCDHA13Q9Y5I0 950 aa22.76■■□□□ 1.23
VPS28-212ENST00000530836 SCN5AQ14524 2016 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 KIF5CO60282 957 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 BAIAP3O94812 1187 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 ASS1P00966 412 aaKnown RBP22.75■■□□□ 1.23
VPS28-212ENST00000530836 NOP14P78316 857 aaKnown RBP22.75■■□□□ 1.23
VPS28-212ENST00000530836 KIF5AQ12840 1032 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 RASIP1Q5U651 963 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 ZNF571Q7Z3V5 609 aaPredicted RBP22.75■■□□□ 1.23
VPS28-212ENST00000530836 PI4K2AQ9BTU6 479 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 ADAMTS1Q9UHI8 967 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 ATP8B3O60423 1300 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 GFPT1Q06210 699 aaPredicted RBP22.75■■□□□ 1.23
VPS28-212ENST00000530836 TMEM132DQ14C87 1099 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 TDHQ8IZJ6 230 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 KIF18AQ8NI77 898 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 TATDN2Q93075 761 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 LZTFL1Q9NQ48 299 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 PAXBP1Q9Y5B6 917 aa22.75■■□□□ 1.23
VPS28-212ENST00000530836 TET1Q8NFU7 2136 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 ZNF263O14978 683 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 EFCAB14O75071 495 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 ATICP31939 592 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 MAGEA1P43355 309 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 BPIFB4P59827 614 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 CYP27A1Q02318 531 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 CUL2Q13617 745 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 JADE1Q6IE81 842 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 FTHL17Q9BXU8 183 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 EIF2AQ9BY44 585 aaKnown RBP22.74■■□□□ 1.23
VPS28-212ENST00000530836 MTIF3Q9H2K0 278 aaKnown RBP22.74■■□□□ 1.23
VPS28-212ENST00000530836 CXXC1Q9P0U4 656 aaPredicted RBP22.74■■□□□ 1.23
VPS28-212ENST00000530836 ITGA11Q9UKX5 1188 aa22.74■■□□□ 1.23
VPS28-212ENST00000530836 R3HCC1Q9Y3T6 440 aaKnown RBP22.74■■□□□ 1.23
VPS28-212ENST00000530836 CST3P01034 146 aaPredicted RBP22.73■■□□□ 1.23
VPS28-212ENST00000530836 NFICP08651 508 aa22.73■■□□□ 1.23
VPS28-212ENST00000530836 ARHGAP25P42331 645 aa22.73■■□□□ 1.23
VPS28-212ENST00000530836 CCDC122Q5T0U0 273 aa22.73■■□□□ 1.23
VPS28-212ENST00000530836 KAT5Q92993 513 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms