RNA–Protein interactions for RNA: ENST00000528922.1

CD44-230, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 1,319 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-230ENST00000528922 C1QTNF3Q9BXJ4 246 aa6.12□□□□□ -1.43
CD44-230ENST00000528922 POGZQ7Z3K3 1410 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 LRPPRCP42704 1394 aaKnown RBP6.11□□□□□ -1.43
CD44-230ENST00000528922 DHX29Q7Z478 1369 aaKnown RBP6.11□□□□□ -1.43
CD44-230ENST00000528922 KRTAP23-1A1A580 65 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 LRRC14BA6NHZ5 514 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 PRR5-ARHGAP8B1AHC4 643 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 PJA2O43164 708 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 TOM1O60784 492 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 OFD1O75665 1012 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 CLRN1P58418 232 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 PTH1RQ03431 593 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 PRKD1Q15139 912 aaPredicted RBP6.11□□□□□ -1.43
CD44-230ENST00000528922 VPS72Q15906 364 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 PGS1Q32NB8 556 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 NBPF8Q3BBV2 869 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 SPATS1Q496A3 300 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 METTL24Q5JXM2 366 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 NXNQ6DKJ4 435 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 CXorf57Q6NSI4 855 aaKnown RBP6.11□□□□□ -1.43
CD44-230ENST00000528922 HTR3DQ70Z44 454 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 GRAMD1CQ8IYS0 662 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 RNF169Q8NCN4 708 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 SLC35G2Q8TBE7 412 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 TFAP2CQ92754 450 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 MAP3K14Q99558 947 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 VRK1Q99986 396 aaPredicted RBP6.11□□□□□ -1.43
CD44-230ENST00000528922 GPR87Q9BY21 358 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 SPON1Q9HCB6 807 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 RGS17Q9UGC6 210 aaPredicted RBP6.11□□□□□ -1.43
CD44-230ENST00000528922 TESMINQ9Y4I5 508 aa6.11□□□□□ -1.43
CD44-230ENST00000528922 GPRASP1Q5JY77 1395 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 XDHP47989 1333 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 E9PCH4 1651 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 MUSKO15146 869 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 SNRPA1P09661 255 aaKnown RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 ATP5JP18859 108 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 RAP2BP61225 183 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 TLE1Q04724 770 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 RRP1BQ14684 758 aaKnown RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 RAB39AQ14964 217 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 MLC1Q15049 377 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 KHDC1Q4VXA5 237 aaKnown RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 DCAF17Q5H9S7 520 aaPredicted RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 NAIF1Q69YI7 327 aaPredicted RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 DRICH1Q6PGQ1 229 aaPredicted RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 SEM1Q6ZVN7 128 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 PLXDC1Q8IUK5 500 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 SYT12Q8IV01 421 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 MYO1HQ8N1T3 1032 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 MAGEB6Q8N7X4 407 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 PNISRQ8TF01 805 aaKnown RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 DIS3LQ8TF46 1054 aaKnown RBP6.1□□□□□ -1.43
CD44-230ENST00000528922 CLIP3Q96DZ5 547 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 CALCOCO1Q9P1Z2 691 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 CHPF2Q9P2E5 772 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 PREX2Q70Z35 1606 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 PLXNC1O60486 1568 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 TTC37Q6PGP7 1564 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 ATP10AO60312 1499 aa6.1□□□□□ -1.43
CD44-230ENST00000528922 ZCCHC11Q5TAX3 1644 aaKnown RBP6.09□□□□□ -1.43
CD44-230ENST00000528922 UNC13BO14795 1591 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 CYP27B1O15528 508 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 TEX33O43247 280 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 DTNBO60941 627 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 ALDH2P05091 517 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 RPLP2P05387 115 aaKnown RBP6.09□□□□□ -1.43
CD44-230ENST00000528922 HSPA6P17066 643 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 ACRV1P26436 265 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 MAN2A2P49641 1150 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 MAP2K6P52564 334 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 TMF1P82094 1093 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 SNAPC2Q13487 334 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 ATXN7L2Q5T6C5 722 aaPredicted RBP6.09□□□□□ -1.43
CD44-230ENST00000528922 EFCAB12Q6NXP0 572 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 ZNF529Q6P280 563 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 PRRT2Q7Z6L0 340 aaPredicted RBP6.09□□□□□ -1.43
CD44-230ENST00000528922 C14orf80Q86SX3 495 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 TAAR9Q96RI9 348 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 NDC1Q9BTX1 674 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 KRTAP4-7Q9BYR0 210 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 NMRK2Q9NPI5 230 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 TSC22D4Q9Y3Q8 395 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 CD109Q6YHK3 1445 aa6.09□□□□□ -1.43
CD44-230ENST00000528922 EIF3AQ14152 1382 aaKnown RBP6.09□□□□□ -1.44
CD44-230ENST00000528922 DUOX2Q9NRD8 1548 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 TCRBV7S2A1N4TA0A589 114 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 B8ZZF3 427 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 LEFTY2O00292 366 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 SBK3P0C264 359 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 MALP21145 153 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 HK3P52790 923 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 CNGB1Q14028 1251 aaPredicted RBP6.08□□□□□ -1.44
CD44-230ENST00000528922 SPDYAQ5MJ70 313 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 DACT2Q5SW24 774 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 GADL1Q6ZQY3 521 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 UBE3BQ7Z3V4 1068 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 C3orf20Q8ND61 904 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 OR10H5Q8NGA6 315 aa6.08□□□□□ -1.44
CD44-230ENST00000528922 ZFP28Q8NHY6 868 aa6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms