RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-219	ENST00000525685	INHBE	P58166	350 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	CDC42EP1	Q00587	391 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	CSRP2	Q16527	193 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	SMN1	Q16637	294 aa	Known RBP	4.91	□□□□□ -1.62
CD44-219	ENST00000525685	GFOD2	Q3B7J2	385 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	LRRC55	Q6ZSA7	311 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	C14orf80	Q86SX3	495 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	TCEAL8	Q8IYN2	117 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	TRMT2A	Q8IZ69	625 aa	Known RBP	4.91	□□□□□ -1.62
CD44-219	ENST00000525685	MVB12A	Q96EY5	273 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	PHACTR3	Q96KR7	559 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	AIFM3	Q96NN9	605 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	AGAP2	Q99490	1192 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	NDC1	Q9BTX1	674 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	MLST8	Q9BVC4	326 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	GTPBP4	Q9BZE4	634 aa	Known RBP	4.91	□□□□□ -1.62
CD44-219	ENST00000525685	ZNF768	Q9H5H4	540 aa	Known RBP	4.91	□□□□□ -1.62
CD44-219	ENST00000525685	C11orf21	Q9P2W6	132 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	IPP	Q9Y573	584 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	DMRT1	Q9Y5R6	373 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	HS3ST4	Q9Y661	456 aa		4.91	□□□□□ -1.62
CD44-219	ENST00000525685	NUP153	P49790	1475 aa	Known RBP	4.91	□□□□□ -1.62
CD44-219	ENST00000525685	PCF11	O94913	1555 aa	Known RBP	4.91	□□□□□ -1.62
CD44-219	ENST00000525685	HECW1	Q76N89	1606 aa		4.9	□□□□□ -1.62
CD44-219	ENST00000525685	CLIP1	P30622	1438 aa		4.9	□□□□□ -1.62
CD44-219	ENST00000525685	TMEM191C	A6NGB0	347 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	KIAA0391	O15091	583 aa	Known RBP	4.9	□□□□□ -1.63
CD44-219	ENST00000525685	FOXN1	O15353	648 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	RAMP2	O60895	175 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	EDNRB	P24530	442 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	APOBEC3A	P31941	199 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-219	ENST00000525685	FLT3LG	P49771	235 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	SP140	Q13342	867 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	ZNF267	Q14586	743 aa	Predicted RBP	4.9	□□□□□ -1.63
CD44-219	ENST00000525685	KRTAP15-1	Q3LI76	137 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	FAM47A	Q5JRC9	791 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	AFMID	Q63HM1	303 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	EFCAB12	Q6NXP0	572 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	SYNE4	Q8N205	404 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	MAGEB6	Q8N7X4	407 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	C3orf20	Q8ND61	904 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	HPS3	Q969F9	1004 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	RGMA	Q96B86	450 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	TTPAL	Q9BTX7	342 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	EIF2B4	Q9UI10	523 aa	Known RBP	4.9	□□□□□ -1.63
CD44-219	ENST00000525685	CLCA2	Q9UQC9	943 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	POLH	Q9Y253	713 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	ACTL7A	Q9Y615	435 aa		4.9	□□□□□ -1.63
CD44-219	ENST00000525685	LRRIQ1	Q96JM4	1722 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	ABCC10	Q5T3U5	1492 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685		B5MCH6	92 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	LEFTY2	O00292	366 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SGTA	O43765	313 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	PPFIA4	O75335	1185 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SNRPA1	P09661	255 aa	Known RBP	4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SLC6A9	P48067	706 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	FAM189B	P81408	668 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	RAB39A	Q14964	217 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	KHDC1	Q4VXA5	237 aa	Known RBP	4.89	□□□□□ -1.63
CD44-219	ENST00000525685	MFSD14B	Q5SR56	506 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	LY6G5C	Q5SRR4	150 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	ANKS6	Q68DC2	871 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	NXN	Q6DKJ4	435 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	LAIR1	Q6GTX8	287 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	DRICH1	Q6PGQ1	229 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-219	ENST00000525685	ZNF572	Q7Z3I7	529 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SYT12	Q8IV01	421 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SH2D3C	Q8N5H7	860 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	ZFP28	Q8NHY6	868 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SLC35G2	Q8TBE7	412 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	PROKR1	Q8TCW9	393 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	TFAP2C	Q92754	450 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	C1GALT1C1	Q96EU7	318 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	CEP95	Q96GE4	821 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	FAM193B	Q96PV7	902 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-219	ENST00000525685	VRK1	Q99986	396 aa	Predicted RBP	4.89	□□□□□ -1.63
CD44-219	ENST00000525685	MRI1	Q9BV20	369 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SLC46A2	Q9BY10	475 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	SIK3	Q9Y2K2	1263 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	CHST2	Q9Y4C5	530 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	PCDHB1	Q9Y5F3	818 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	PCDHA3	Q9Y5H8	950 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	CEP162	Q5TB80	1403 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	FMN1	Q68DA7	1419 aa		4.89	□□□□□ -1.63
CD44-219	ENST00000525685	WDR7	Q9Y4E6	1490 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	GLI2	P10070	1586 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	TBKBP1	A7MCY6	615 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	VSTM5	A8MXK1	200 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685		H3BUI4	141 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	ERC2	O15083	957 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	SLC16A6	O15403	523 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	PRPF3	O43395	683 aa	Known RBP	4.88	□□□□□ -1.63
CD44-219	ENST00000525685	ARIH2	O95376	493 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	ABHD16A	O95870	558 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	POMC	P01189	267 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	MYB	P10242	640 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	FPR1	P21462	350 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	LPO	P22079	712 aa	Predicted RBP	4.88	□□□□□ -1.63
CD44-219	ENST00000525685	ALDH1A3	P47895	512 aa		4.88	□□□□□ -1.63
CD44-219	ENST00000525685	CLRN1	P58418	232 aa		4.88	□□□□□ -1.63

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