RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 NTPCRQ9BSD7 190 aaKnown RBP0.04□□□□□ -2.4
RNU6-539P-201ENST00000516665 RNPEPQ9H4A4 650 aa0.04□□□□□ -2.4
RNU6-539P-201ENST00000516665 C6orf106Q9H6K1 298 aaPredicted RBP0.04□□□□□ -2.4
RNU6-539P-201ENST00000516665 TP53TG3Q9ULZ0 132 aa0.04□□□□□ -2.4
RNU6-539P-201ENST00000516665 B5MCH6 92 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 SOD2P04179 222 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 LDHBP07195 334 aaKnown RBP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 ACAA1P09110 424 aaPredicted RBP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 CLEC2LP0C7M8 214 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 GAAP10253 952 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 PCSK6P29122 969 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 GJA8P48165 433 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 FXR1P51114 621 aaKnown RBP eCLIP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 ALDH6A1Q02252 535 aaKnown RBP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 ZNF268Q14587 947 aaPredicted RBP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 KIAA1755Q5JYT7 1200 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 MEX3CQ5U5Q3 659 aaKnown RBP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 PDXDC1Q6P996 788 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 IGFL3Q6UXB1 125 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 ARHGAP30Q7Z6I6 1101 aaPredicted RBP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 UIMC1Q96RL1 719 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 CHRDL1Q9BU40 450 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 PHF20Q9BVI0 1012 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 PHAXQ9H814 394 aaKnown RBP0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 MANSC1Q9H8J5 431 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 IPPKQ9H8X2 491 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 WFDC1Q9HC57 220 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 MLXIPLQ9NP71 852 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 PCDHA7Q9UN72 937 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 GAB2Q9UQC2 676 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 ASB1Q9Y576 335 aa0.03□□□□□ -2.4
RNU6-539P-201ENST00000516665 ATRXP46100 2492 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 FZD9O00144 591 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 PODXLO00592 558 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 TLR2O60603 784 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 PPP1R3DO95685 299 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 P4HBP07237 508 aaKnown RBP0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 PKMP14618 531 aaKnown RBP0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 MAPK1P28482 360 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 LIN28BQ6ZN17 250 aaKnown RBP eCLIP0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 ZNF497Q6ZNH5 498 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 MED25Q71SY5 747 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 RSRC2Q7L4I2 434 aaKnown RBP0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 RTN4RL1Q86UN2 441 aaPredicted RBP0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 P2RY8Q86VZ1 359 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 MMP21Q8N119 569 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 Q8NA96 180 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 RFKQ969G6 155 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 PPP1R14AQ96A00 147 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 FOXRED1Q96CU9 486 aaPredicted RBP0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 FUBP3Q96I24 572 aaKnown RBP eCLIP0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 PGBD1Q96JS3 809 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 EXOC2Q96KP1 924 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 SIGLEC11Q96RL6 698 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 ATOH8Q96SQ7 321 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 SOX7Q9BT81 388 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 KCMF1Q9P0J7 381 aa0.02□□□□□ -2.41
RNU6-539P-201ENST00000516665 CNOT3O75175 753 aaKnown RBP0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 SRSF10O75494 262 aaKnown RBP0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 PRSS23O95084 383 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 JUPP14923 745 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 GATA3P23771 443 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 HNRNPMP52272 730 aaKnown RBP eCLIP0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 PGGT1BP53609 377 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 APBA1Q02410 837 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 ZNF91Q05481 1191 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 GPR19Q15760 415 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 OSTM1Q86WC4 334 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 C11orf53Q8IXP5 236 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 IFNL3Q8IZI9 196 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 RBBP8NLQ8NC74 664 aaPredicted RBP0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 ZFP28Q8NHY6 868 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 SLC35B2Q8TB61 432 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 ERCC4Q92889 916 aaPredicted RBP0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 CEP95Q96GE4 821 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 ZFYVE19Q96K21 471 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 PGLYRP2Q96PD5 576 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 APBA2Q99767 749 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 FOXB1Q99853 325 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 TMEM8AQ9HCN3 771 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 HSFX1Q9UBD0 423 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 POU2F3Q9UKI9 436 aa0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 NOC2LQ9Y3T9 749 aaKnown RBP0.01□□□□□ -2.41
RNU6-539P-201ENST00000516665 IGLV5-39A0A0G2JS06 123 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 FOXP2O15409 715 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 NR2F6P10588 404 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 CYP2A6P11509 494 aaPredicted RBP0□□□□□ -2.41
RNU6-539P-201ENST00000516665 IMPDH2P12268 514 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 HOXB2P14652 356 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 KRT15P19012 456 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 ZBTB25P24278 435 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 LGALS4P56470 323 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 GHRHRQ02643 423 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 DUSP2Q05923 314 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 COASYQ13057 564 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 ZRSR1Q15695 479 aaKnown RBP0□□□□□ -2.41
RNU6-539P-201ENST00000516665 CATSPEREQ5SY80 951 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 CC2D1AQ6P1N0 951 aaPredicted RBP0□□□□□ -2.41
RNU6-539P-201ENST00000516665 SPSB3Q6PJ21 355 aa0□□□□□ -2.41
RNU6-539P-201ENST00000516665 KCNT2Q6UVM3 1135 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms