RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 GRAPLQ8TC17 118 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ARHGEF1Q92888 912 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 VPS39Q96JC1 886 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 APOL6Q9BWW8 343 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 GPR108Q9NPR9 543 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ABCF3Q9NUQ8 709 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 DDX18Q9NVP1 670 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CEP72Q9P209 647 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 STK39Q9UEW8 545 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 SH3GLB1Q9Y371 365 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 DIP2CQ9Y2E4 1556 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 CLRN2A0PK11 232 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 PRAMEF22A3QJZ6 481 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 INO80B-WBP1J3KQ70 363 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 BCL10O95999 233 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 AGTP01019 485 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 GNL1P36915 607 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 PTGISQ16647 500 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ARL6IP4Q66PJ3 421 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 ANGPTL8Q6UXH0 198 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 LPCAT2Q7L5N7 544 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 P3H2Q8IVL5 708 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 PPM1NQ8N819 430 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 GANCQ8TET4 914 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 SKA1Q96BD8 255 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 TSPAN18Q96SJ8 248 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 VPS11Q9H270 941 aa9.16□□□□□ -0.94
LIMCH1-218ENST00000513024 AXIN1O15169 862 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 MYBL1P10243 752 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 SCRN3Q0VDG4 424 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 FOXP4Q8IVH2 680 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 OR8H2Q8N162 312 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 RNF25Q96BH1 459 aaPredicted RBP9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 TINF2Q9BSI4 451 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 SLITRK6Q9H5Y7 841 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 NGRNQ9NPE2 291 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 PARVAQ9NVD7 372 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 PITPNM2Q9BZ72 1349 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 B2RBV5 119 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 NQO1P15559 274 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 PSMC3P17980 439 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 PTPN12Q05209 780 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 ZNF394Q53GI3 561 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 TMEM63BQ5T3F8 832 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 GPATCH4Q5T3I0 446 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 PIGOQ8TEQ8 1089 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 RSPH1Q8WYR4 309 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 HSPH1Q92598 858 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 CEP170P1Q96L14 293 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 SLC13A1Q9BZW2 595 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 TMEM206Q9H813 350 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 CYLDQ9NQC7 956 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 LRCH1Q9Y2L9 728 aa9.15□□□□□ -0.94
LIMCH1-218ENST00000513024 DCDC2CA8MYV0 355 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 TRIM13O60858 407 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 TJP3O95049 919 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 MSL3P1P0C860 447 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 FDX1P10109 184 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 OSTNP61366 133 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 SNAPC2Q13487 334 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 SMAD1Q15797 465 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 RUNDC3AQ59EK9 446 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 FAM182BQ5T319 152 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 SCARA5Q6ZMJ2 495 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 C3orf20Q8ND61 904 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 SLC7A3Q8WY07 619 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 GLMNQ92990 594 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 CHP1Q99653 195 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 PRMT1Q99873 361 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 LIMA1Q9UHB6 759 aaKnown RBP9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 IGSF1Q8N6C5 1336 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 CCDC162PA2VCL2 907 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 CYTH3O43739 400 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 MYL3P08590 195 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 FGFR4P22455 802 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 NT5C2P49902 561 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 LGALS3BPQ08380 585 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 KCNH2Q12809 1159 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 ZNF746Q6NUN9 644 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 GIMAP8Q8ND71 665 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 OXER1Q8TDS5 423 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 CEP95Q96GE4 821 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 AAASQ9NRG9 546 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 ADAM22Q9P0K1 906 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 FAM153AQ9UHL3 310 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 SERPINB13Q9UIV8 391 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 C2CD2Q9Y426 696 aa9.15□□□□□ -0.95
LIMCH1-218ENST00000513024 A0A1W2PRG6 482 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 MED26O95402 600 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ALBP02768 609 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 ASPRV1Q53RT3 343 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 IKBIPQ70UQ0 350 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CCNYL1Q8N7R7 359 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 C19orf18Q8NEA5 215 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 BHMTQ93088 406 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 DYNLL2Q96FJ2 89 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 GORASP1Q9BQQ3 440 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 CHID1Q9BWS9 393 aa9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 SPRTNQ9H040 489 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-218ENST00000513024 DBNDD1Q9H9R9 158 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms