RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ZC2HC1CQ53FD0 456 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-215ENST00000496447 RCOR2Q8IZ40 523 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.82□□□□□ -0.2
PTPRF-215ENST00000496447 SYF2O95926 243 aaKnown RBP13.82□□□□□ -0.2
PTPRF-215ENST00000496447 STAG3L1P0CL83 205 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 ALDH7A1P49419 539 aaKnown RBP13.82□□□□□ -0.2
PTPRF-215ENST00000496447 DEUP1Q05D60 604 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 GRAMD4Q6IC98 578 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 CEP70Q8NHQ1 597 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 SLC26A7Q8TE54 656 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 SLC13A1Q9BZW2 595 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 MYMKA6NI61 221 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 AKT1P31749 480 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 SESN2P58004 480 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-215ENST00000496447 SDE2Q6IQ49 451 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 ERO1BQ86YB8 467 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 TBC1D19Q8N5T2 526 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 ATXN7L3BQ96GX2 97 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 BTBD6Q96KE9 485 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 ANKEF1Q9NU02 776 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 PRG3Q9Y2Y8 225 aaPredicted RBP13.82□□□□□ -0.2
PTPRF-215ENST00000496447 EXTL3O43909 919 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 GYS1P13807 737 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 KLRK1P26718 216 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 ACADSBP45954 432 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 TGFB2P61812 414 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 ARHGAP15Q53QZ3 475 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 RDM1Q8NG50 284 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 AGAP3Q96P47 875 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 MAP3K14Q99558 947 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 FAM167BQ9BTA0 163 aa13.82□□□□□ -0.2
PTPRF-215ENST00000496447 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.82□□□□□ -0.21e-15■■□□□ 12.8
PTPRF-215ENST00000496447 HNRNPCL2B2RXH8 293 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 AP3B1O00203 1094 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 HNRNPCL1O60812 293 aaKnown RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 HLA-DRAP01903 254 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 KCNA2P16389 499 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 MAP4P27816 1152 aaKnown RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 ARHGEF7Q14155 803 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 INTS5Q6P9B9 1019 aaKnown RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 DDIASQ8IXT1 998 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 HIPK4Q8NE63 616 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 TEKT4Q8WW24 435 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 PRMT6Q96LA8 375 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 MCEEQ96PE7 176 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 ZFATQ9P243 1243 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 ADGRG1Q9Y653 693 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 CNTNAP5Q8WYK1 1306 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 PSMD3O43242 534 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 LRG1P02750 347 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 MFN1Q8IWA4 741 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 RUBCNQ92622 972 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 TEX12Q9BXU0 123 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 HNRNPH1P31943 449 aaKnown RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 ARL4DP49703 201 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 GBA2Q9HCG7 927 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 UVRAGQ9P2Y5 699 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 DIP2AQ14689 1571 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 DCDC2CA8MYV0 355 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 C2CD2LO14523 706 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 DIAPH2O60879 1101 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 PDHA1P08559 390 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 GNL1P36915 607 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 PCYT1AP49585 367 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 ADSSL1Q8N142 457 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 SLC7A14Q8TBB6 771 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 RNPC3Q96LT9 517 aaKnown RBP13.81□□□□□ -0.2
PTPRF-215ENST00000496447 SLITRK1Q96PX8 696 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 POLLQ9UGP5 575 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 PXDNLA1KZ92 1463 aa13.81□□□□□ -0.2
PTPRF-215ENST00000496447 ESYT3A0FGR9 886 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 ENO4A6NNW6 628 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 USP27XA6NNY8 438 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 RHOBTB3O94955 611 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 PYGBP11216 843 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 DPYDQ12882 1025 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 EIF2AQ9BY44 585 aaKnown RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 CLCA2Q9UQC9 943 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 MYO3AQ8NEV4 1616 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 ABCA9Q8IUA7 1624 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 EIF3DO15371 548 aaKnown RBP eCLIP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 HIST1H2AGP0C0S8 130 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 HIST1H2ADP20671 130 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 RPA1P27694 616 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 GCLCP48506 637 aaPredicted RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 HARS2P49590 506 aaKnown RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 NPEPPSP55786 919 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 PPP4CP60510 307 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 SNRPFP62306 86 aaKnown RBP13.8□□□□□ -0.2
PTPRF-215ENST00000496447 ANKS3Q6ZW76 656 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 NUDCD3Q8IVD9 361 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 HIST1H2AHQ96KK5 128 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 FOPNLQ96NB1 174 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 HIST1H2AJQ99878 128 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 H2AFJQ9BTM1 129 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 COLEC11Q9BWP8 271 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 TMEM60Q9H2L4 133 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 DLC1Q96QB1 1528 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 GRAP2O75791 330 aa13.8□□□□□ -0.2
PTPRF-215ENST00000496447 PNPLA4P41247 253 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms