RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 BTBD6Q96KE9 485 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 C9orf72Q96LT7 481 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 IWS1Q96ST2 819 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 RBM15Q96T37 977 aaKnown RBP eCLIP10.27□□□□□ -0.77
SYNE1-230ENST00000495090 ZNF184Q99676 751 aaPredicted RBP10.27□□□□□ -0.77
SYNE1-230ENST00000495090 IKZF4Q9H2S9 585 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 BCAS3Q9H6U6 928 aa10.27□□□□□ -0.77
SYNE1-230ENST00000495090 DNAJC17Q9NVM6 304 aaKnown RBP10.27□□□□□ -0.77
SYNE1-230ENST00000495090 CNTNAP4Q9C0A0 1308 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 GSTTP1A0A1W2PQM5 241 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 SFI1A8K8P3 1242 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 PIK3CDO00329 1044 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 CAPN9O14815 690 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 MAP3K7O43318 606 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 TOM1O60784 492 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 SPAG7O75391 227 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 HAUS5O94927 633 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 MYBL1P10243 752 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 CA4P22748 312 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 ADSSP30520 456 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 RPA3P35244 121 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-230ENST00000495090 MFAP3P55082 362 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 EIF6P56537 245 aaKnown RBP10.26□□□□□ -0.77
SYNE1-230ENST00000495090 SNRPFP62306 86 aaKnown RBP10.26□□□□□ -0.77
SYNE1-230ENST00000495090 PPP2R5CQ13362 524 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 ACSBG2Q5FVE4 666 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 HHATQ5VTY9 493 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 DSTYKQ6XUX3 929 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 MTDHQ86UE4 582 aaKnown RBP10.26□□□□□ -0.77
SYNE1-230ENST00000495090 NBPF5PQ86XG9 351 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-230ENST00000495090 CPNE8Q86YQ8 564 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 ARHGAP24Q8N264 748 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 ATG4AQ8WYN0 398 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 DDX27Q96GQ7 796 aaKnown RBP10.26□□□□□ -0.77
SYNE1-230ENST00000495090 NSL1Q96IY1 281 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 UIMC1Q96RL1 719 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 SETDB2Q96T68 719 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 EPAS1Q99814 870 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 PHACTR1Q9C0D0 580 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 TMEM206Q9H813 350 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 IL1RAPL1Q9NZN1 696 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 SLAIN2Q9P270 581 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 DNAJB4Q9UDY4 337 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 TAF1LQ8IZX4 1826 aa10.26□□□□□ -0.77
SYNE1-230ENST00000495090 F8W8V4 182 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TM9SF1O15321 606 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 PSTPIP1O43586 416 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TGDSO95455 350 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 IL1BP01584 269 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 CYP11B1P15538 503 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 MAPK4P31152 587 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 RAP1GDS1P52306 607 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 PPP3CAQ08209 521 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 GRAPQ13588 217 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 SLC1A5Q15758 541 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 PKN2Q16513 984 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 ODR4Q5SWX8 454 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 RFWD3Q6PCD5 774 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 DRICH1Q6PGQ1 229 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TPTE2Q6XPS3 522 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 KCTD1Q719H9 257 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 ZC3H18Q86VM9 953 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 B4GALNT2Q8NHY0 566 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 FAM81AQ8TBF8 368 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 GRAPLQ8TC17 118 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 STMN2Q93045 179 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TRIM11Q96F44 468 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 RBM41Q96IZ5 413 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 GBP5Q96PP8 586 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 P2RX7Q99572 595 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 VPS11Q9H270 941 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 VCX3BQ9H321 246 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 CD209Q9NNX6 404 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 VCX3AQ9NNX9 186 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 PSMC3IPQ9P2W1 217 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 SERPINB13Q9UIV8 391 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 ANGPTL2Q9UKU9 493 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 RBBP6Q7Z6E9 1792 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 LOXHD1Q8IVV2 1947 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 UMODL1Q5DID0 1318 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 FAM196BA6NMK8 535 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 DNALI1O14645 258 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 GYG2O15488 501 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TBX10O75333 385 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 KRT36O76013 467 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 SLITRK3O94933 977 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 KRT15P19012 456 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 POLE2P56282 527 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 ADCY1Q08828 1119 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TRIP13Q15645 432 aaPredicted RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 TBC1D25Q3MII6 688 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 C1orf220Q5T0J3 134 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 RBM26Q5T8P6 1007 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 SLC47A2Q86VL8 602 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 KIAA0825Q8IV33 1275 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 SYCP3Q8IZU3 236 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 PHC3Q8NDX5 983 aa10.25□□□□□ -0.77
SYNE1-230ENST00000495090 DDX1Q92499 740 aaKnown RBP10.25□□□□□ -0.77
SYNE1-230ENST00000495090 MKL1Q969V6 931 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms