RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 CFAP58Q5T655 872 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 EEF1DP3Q658K8 133 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 PASD1Q8IV76 773 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 ZDHHC14Q8IZN3 488 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 PRELID2Q8N945 189 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 RUFY1Q96T51 708 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 TRIM7Q9C029 511 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 CLEC11AQ9Y240 323 aa22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 UTP11Q9Y3A2 253 aaKnown RBP22.54■■□□□ 1.2
CCDC88B-208ENST00000492980 CCL15-CCL14A0A0B4J2E2 113 aa22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 RBM47A0AV96 593 aaKnown RBP22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 PHF2O75151 1096 aa22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 GH1P01241 217 aa22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 INSRRP14616 1297 aa22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 CCL15Q16663 113 aa22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 MAP1SQ66K74 1059 aaPredicted RBP22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 LLGL2Q6P1M3 1020 aa22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 MGAMO43451 1857 aa22.53■■□□□ 1.2
CCDC88B-208ENST00000492980 GOLGA8KD6RF30 607 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 RWDD2BP57060 319 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 IGBP1P78318 339 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 MKRN3Q13064 507 aaKnown RBP22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 DHX34Q14147 1143 aaKnown RBP22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 C2CD6Q53TS8 623 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 PHLDB2Q86SQ0 1253 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 THNSL1Q8IYQ7 743 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 BRI3BPQ8WY22 251 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 NFKBIZQ9BYH8 718 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 KATNBL1Q9H079 304 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 RAB17Q9H0T7 212 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 FAM114A2Q9NRY5 505 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 PRDM4Q9UKN5 801 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 ERICH4A6NGS2 130 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 THAP12O43422 761 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 SSTR3P32745 418 aaPredicted RBP22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 GTF2A2P52657 109 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 SLC13A5Q86YT5 568 aaPredicted RBP22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 EFCAB13Q8IY85 973 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 GOLGA6L1Q8N7Z2 621 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 CEP120Q8N960 986 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 PPTC7Q8NI37 304 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 C11orf70Q9BRQ4 267 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 ZMYND15Q9H091 742 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 DPH5Q9H2P9 285 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 MORF4L1Q9UBU8 362 aa22.52■■□□□ 1.2
CCDC88B-208ENST00000492980 FAM187AA6NFU0 413 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 IQCF3P0C7M6 154 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 CHRNA3P32297 505 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 SGSM1Q2NKQ1 1148 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 CDR2LQ86X02 465 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 PHF13Q86YI8 300 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 LINC01465Q8N7H1 131 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 EMID1Q96A84 441 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 NIF3L1Q9GZT8 377 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 CDT1Q9H211 546 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 TNFSF13BQ9Y275 285 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 GOLGA6CA6NDK9 693 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 B4GALT4O60513 344 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 GOLGA6DP0CG33 693 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 TFAMQ00059 246 aaKnown RBP22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 TMEM132AQ24JP5 1023 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 ZNF467Q7Z7K2 595 aaPredicted RBP22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 AFG1LQ8WV93 481 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 C18orf8Q96DM3 657 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 IFT122Q9HBG6 1241 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 GOLGA6AQ9NYA3 693 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 ADAM22Q9P0K1 906 aa22.51■■□□□ 1.19
CCDC88B-208ENST00000492980 TCRBV7S2A1N4TA0A589 114 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 ADCYAP1R1P41586 468 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 PTGIRP43119 386 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 GCLCP48506 637 aaPredicted RBP22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 OSTNP61366 133 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 PTP4A2Q12974 167 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 PPFIA1Q13136 1202 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 TTMPQ5BVD1 217 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 LIN9Q5TKA1 542 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 DUPD1Q68J44 220 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 ANKRD23Q86SG2 305 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 JAMLQ86YT9 394 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 CD302Q8IX05 232 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 ARL8AQ96BM9 186 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 VCPIP1Q96JH7 1222 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 ERP44Q9BS26 406 aa22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 PRMT7Q9NVM4 692 aaPredicted RBP22.5■■□□□ 1.19
CCDC88B-208ENST00000492980 STRNO43815 780 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 TMEM191BP0C7N4 346 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 SLC1A1P43005 524 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 PHKA2P46019 1235 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 POU5F1BQ06416 359 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 TRPC3Q13507 836 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 SIX1Q15475 284 aaPredicted RBP22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 CYP1B1Q16678 543 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 ZNF606Q8WXB4 792 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 PCYOX1Q9UHG3 505 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 IVNS1ABPQ9Y6Y0 642 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 MYO1FO00160 1098 aa22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 SNAI1O95863 264 aaPredicted RBP22.49■■□□□ 1.19
CCDC88B-208ENST00000492980 ZNF286BP0CG31 522 aa22.49■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms