RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 TNFSF13BQ9Y275 285 aa11.49□□□□□ -0.57
USP4-214ENST00000491791 BRCA2P51587 3418 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 GOLGA6L10A0A0M3HER8 536 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 GOLGA6BA6NDN3 693 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 PPFIA4O75335 1185 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 RPS6KA5O75582 802 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 IL18RAPO95256 599 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 C22orf31O95567 290 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 LSM8O95777 96 aaKnown RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 MYCP01106 439 aaPredicted RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 GH1P01241 217 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 PRKCBP05771 671 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 COMTP21964 271 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 CHRNA3P32297 505 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 CDH5P33151 784 aaPredicted RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 MAN1A1P33908 653 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 USP8P40818 1118 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 PIK3CAP42336 1068 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 TNNT3P45378 269 aaPredicted RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 C1QBPQ07021 282 aaKnown RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 DRP2Q13474 957 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 KYAT1Q16773 422 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 DUOXA2Q1HG44 320 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 SGSM1Q2NKQ1 1148 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 LRIG3Q6UXM1 1119 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 MON1BQ7L1V2 547 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 ARMCX2Q7L311 632 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 C12orf50Q8NA57 414 aaPredicted RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 PPTC7Q8NI37 304 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 ZNF564Q8TBZ8 553 aaPredicted RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 NUP85Q9BW27 656 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 ZNF518BQ9C0D4 1074 aa11.48□□□□□ -0.57
USP4-214ENST00000491791 SEPT11Q9NVA2 429 aaKnown RBP11.48□□□□□ -0.57
USP4-214ENST00000491791 CEP290O15078 2479 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PLXNA1Q9UIW2 1896 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 A6NNZ2 444 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 GOLGA8KD6RF30 607 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PODXLO00592 558 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 SORBS3O60504 671 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PHF2O75151 1096 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 FGGP02679 453 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 HOXC6P09630 235 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 KRT5P13647 590 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 GGCXP38435 758 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 NOMO3P69849 1222 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 NOP14P78316 857 aaKnown RBP11.47□□□□□ -0.57
USP4-214ENST00000491791 CAP1Q01518 475 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 MBTD1Q05BQ5 628 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 NCOA4Q13772 614 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 TUBB8Q3ZCM7 444 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 ZBTB41Q5SVQ8 909 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 TAF3Q5VWG9 929 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 DUPD1Q68J44 220 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PLEKHA7Q6IQ23 1121 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 RNF149Q8NC42 400 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 OR5B17Q8NGF7 314 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 RAET1EQ8TD07 263 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 SH3TC2Q8TF17 1288 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 ZNF653Q96CK0 615 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 LRRC45Q96CN5 670 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PI4K2AQ9BTU6 479 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PLVAPQ9BX97 442 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 RAB17Q9H0T7 212 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 VRTNQ9H8Y1 702 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PRMT7Q9NVM4 692 aaPredicted RBP11.47□□□□□ -0.57
USP4-214ENST00000491791 CNOT8Q9UFF9 292 aaKnown RBP11.47□□□□□ -0.57
USP4-214ENST00000491791 NFU1Q9UMS0 254 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PCDHGC3Q9UN70 934 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 NUB1Q9Y5A7 615 aa11.47□□□□□ -0.57
USP4-214ENST00000491791 PLXNB2O15031 1838 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 TTLL13PA6NNM8 815 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 FSCN2O14926 492 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 POLR3GO15318 223 aaPredicted RBP11.46□□□□□ -0.57
USP4-214ENST00000491791 RNF40O75150 1001 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 STAU1O95793 577 aaKnown RBP11.46□□□□□ -0.57
USP4-214ENST00000491791 MCF2P10911 925 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 ITGA4P13612 1032 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 PTGIRP43119 386 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 PSMC4P43686 418 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 RWDD2BP57060 319 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 TNFAIP2Q03169 654 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 PPFIA1Q13136 1202 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 BIRC3Q13489 604 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 GRB14Q14449 540 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 ATF7IP2Q5U623 682 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 C17orf99Q6UX52 265 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 SLC13A5Q86YT5 568 aaPredicted RBP11.46□□□□□ -0.57
USP4-214ENST00000491791 FBXO16Q8IX29 292 aaPredicted RBP11.46□□□□□ -0.57
USP4-214ENST00000491791 KLHL7Q8IXQ5 586 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 GOLGA6L1Q8N7Z2 621 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 MAIP1Q8WWC4 291 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 PIK3R5Q8WYR1 880 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 PARK7Q99497 189 aaKnown RBP11.46□□□□□ -0.57
USP4-214ENST00000491791 ERP44Q9BS26 406 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 TXLNGYQ9BZA5 131 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 IMPG2Q9BZV3 1241 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 ARHGAP39Q9C0H5 1083 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 NIF3L1Q9GZT8 377 aa11.46□□□□□ -0.57
USP4-214ENST00000491791 DDX47Q9H0S4 455 aaKnown RBP11.46□□□□□ -0.57
USP4-214ENST00000491791 XYLT2Q9H1B5 865 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms