RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 COL9A2Q14055 689 aaPredicted RBP9.02□□□□□ -0.97
USP39-216ENST00000490193 CSRP2Q16527 193 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 XKR4Q5GH76 650 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 FAM78AQ5JUQ0 283 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 EEF1DP3Q658K8 133 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 DEPDC1BQ8WUY9 529 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 BSNDQ8WZ55 320 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 MSANTD3Q96H12 275 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 LARP6Q9BRS8 491 aaKnown RBP9.02□□□□□ -0.97
USP39-216ENST00000490193 BRD9Q9H8M2 597 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 TRPV4Q9HBA0 871 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 ZFP14Q9HCL3 533 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 ZNF334Q9HCZ1 680 aaPredicted RBP9.02□□□□□ -0.97
USP39-216ENST00000490193 TUFT1Q9NNX1 390 aa9.02□□□□□ -0.97
USP39-216ENST00000490193 NDRG2Q9UN36 371 aaKnown RBP9.02□□□□□ -0.97
USP39-216ENST00000490193 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.02□□□□□ -0.97
USP39-216ENST00000490193 NUP210Q8TEM1 1887 aaPredicted RBP9.02□□□□□ -0.97
USP39-216ENST00000490193 ARNTLO00327 626 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 NRG2O14511 850 aaPredicted RBP9.01□□□□□ -0.97
USP39-216ENST00000490193 SYN3O14994 580 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 PFKFB2O60825 505 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 MOSPD3O75425 235 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 CTDNEP1O95476 244 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 CHRNB1P11230 501 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 PSMC3P17980 439 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 CYP11B2P19099 503 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 ATP2B1P20020 1258 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 ELF1P32519 619 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 CNR2P34972 360 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 KRT2P35908 639 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 CCR2P41597 374 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 TXKP42681 527 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 BRCC3P46736 316 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 MRPL58Q14197 206 aaKnown RBP9.01□□□□□ -0.97
USP39-216ENST00000490193 GAS6Q14393 721 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 GRM2Q14416 872 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 PPP2R5AQ15172 486 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 PPM1JQ5JR12 505 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 GLRA4Q5JXX5 417 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 TPGS2Q68CL5 300 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 C1orf228Q6PIY5 440 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 VITQ6UXI7 678 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 ALKAL1Q6UXT8 129 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 PRR23CQ6ZRP0 262 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 MAEAQ7L5Y9 396 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 CATSPER3Q86XQ3 398 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 SPEM1Q8N4L4 309 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 LEMD2Q8NC56 503 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 FAM3CQ92520 227 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 WASF1Q92558 559 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 SMARCD2Q92925 531 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 TCEAL4Q96EI5 215 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 NACC1Q96RE7 527 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 CORO1BQ9BR76 489 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 POLR3CQ9BUI4 534 aaPredicted RBP9.01□□□□□ -0.97
USP39-216ENST00000490193 LMAN1LQ9HAT1 526 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 BRMS1Q9HCU9 246 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 SEMA4GQ9NTN9 838 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 MAFFQ9ULX9 164 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 GDAQ9Y2T3 454 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 INSL5Q9Y5Q6 135 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 PIAS3Q9Y6X2 628 aa9.01□□□□□ -0.97
USP39-216ENST00000490193 KIF26AQ9ULI4 1882 aaPredicted RBP9□□□□□ -0.97
USP39-216ENST00000490193 SPAG17Q6Q759 2223 aa9□□□□□ -0.97
USP39-216ENST00000490193 A0A087WWV3 80 aa9□□□□□ -0.97
USP39-216ENST00000490193 SMIM28A0A1B0GU29 152 aa9□□□□□ -0.97
USP39-216ENST00000490193 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9□□□□□ -0.97
USP39-216ENST00000490193 I3L4J1 428 aa9□□□□□ -0.97
USP39-216ENST00000490193 WNT7AO00755 349 aa9□□□□□ -0.97
USP39-216ENST00000490193 PRRG1O14668 218 aa9□□□□□ -0.97
USP39-216ENST00000490193 MED24O75448 989 aa9□□□□□ -0.97
USP39-216ENST00000490193 SEC24AO95486 1093 aa9□□□□□ -0.97
USP39-216ENST00000490193 FDPSP14324 419 aaKnown RBP9□□□□□ -0.97
USP39-216ENST00000490193 MUTP22033 750 aa9□□□□□ -0.97
USP39-216ENST00000490193 GDI1P31150 447 aa9□□□□□ -0.97
USP39-216ENST00000490193 HOXA6P31267 233 aa9□□□□□ -0.97
USP39-216ENST00000490193 GRM5P41594 1212 aa9□□□□□ -0.97
USP39-216ENST00000490193 CXCL12P48061 93 aa9□□□□□ -0.97
USP39-216ENST00000490193 EFNA5P52803 228 aa9□□□□□ -0.97
USP39-216ENST00000490193 SATB1Q01826 763 aa9□□□□□ -0.97
USP39-216ENST00000490193 SOX4Q06945 474 aaPredicted RBP9□□□□□ -0.97
USP39-216ENST00000490193 PTGDRQ13258 359 aa9□□□□□ -0.97
USP39-216ENST00000490193 TMEM132AQ24JP5 1023 aa9□□□□□ -0.97
USP39-216ENST00000490193 NT5DC1Q5TFE4 455 aa9□□□□□ -0.97
USP39-216ENST00000490193 ATF7IP2Q5U623 682 aa9□□□□□ -0.97
USP39-216ENST00000490193 PDZD4Q76G19 769 aaPredicted RBP9□□□□□ -0.97
USP39-216ENST00000490193 APBB1IPQ7Z5R6 666 aaPredicted RBP9□□□□□ -0.97
USP39-216ENST00000490193 MFSD6LQ8IWD5 586 aa9□□□□□ -0.97
USP39-216ENST00000490193 DEPTORQ8TB45 409 aa9□□□□□ -0.97
USP39-216ENST00000490193 DDX1Q92499 740 aaKnown RBP9□□□□□ -0.97
USP39-216ENST00000490193 GPR88Q9GZN0 384 aa9□□□□□ -0.97
USP39-216ENST00000490193 GOLGA2P5Q9HBQ8 144 aa9□□□□□ -0.97
USP39-216ENST00000490193 TOPORSQ9NS56 1045 aaPredicted RBP9□□□□□ -0.97
USP39-216ENST00000490193 PDRG1Q9NUG6 133 aa9□□□□□ -0.97
USP39-216ENST00000490193 SLC38A7Q9NVC3 462 aa9□□□□□ -0.97
USP39-216ENST00000490193 ORC3Q9UBD5 711 aaPredicted RBP9□□□□□ -0.97
USP39-216ENST00000490193 TNFSF13BQ9Y275 285 aa9□□□□□ -0.97
USP39-216ENST00000490193 USP20Q9Y2K6 914 aa9□□□□□ -0.97
USP39-216ENST00000490193 NCANO14594 1321 aa9□□□□□ -0.97
USP39-216ENST00000490193 CNOT1A5YKK6 2376 aaKnown RBP8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms