RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 PRAMEF10O60809 474 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 MOSPD3O75425 235 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 ENDOD1O94919 500 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 TFF2Q03403 129 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 SLFN5Q08AF3 891 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 MUM1L1Q5H9M0 696 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 MORN5Q5VZ52 161 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 SUMO4Q6EEV6 95 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 ZNF517Q6ZMY9 492 aaPredicted RBP4.76□□□□□ -1.65
SMC4-220ENST00000488017 TSPEARQ8WU66 669 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 CYFIP2Q96F07 1278 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 HAPLN3Q96S86 360 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 FEZ1Q99689 392 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 MYOCQ99972 504 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 BHMT2Q9H2M3 363 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 NRIP3Q9NQ35 241 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 NEU2Q9Y3R4 380 aa4.76□□□□□ -1.65
SMC4-220ENST00000488017 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.75□□□□□ -1.65
SMC4-220ENST00000488017 LATS1O95835 1130 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 FPR1P21462 350 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 CCT4P50991 539 aaKnown RBP4.75□□□□□ -1.65
SMC4-220ENST00000488017 FOXG1P55316 489 aaPredicted RBP4.75□□□□□ -1.65
SMC4-220ENST00000488017 RPS7P62081 194 aaKnown RBP4.75□□□□□ -1.65
SMC4-220ENST00000488017 KLF9Q13886 244 aaPredicted RBP4.75□□□□□ -1.65
SMC4-220ENST00000488017 TXNRD1Q16881 649 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 ANO4Q32M45 955 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 ATP13A4Q4VNC1 1196 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 SLC9A4Q6AI14 798 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 CLNKQ7Z7G1 428 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 NIM1KQ8IY84 436 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 WACQ9BTA9 647 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 TARS2Q9BW92 718 aaKnown RBP4.75□□□□□ -1.65
SMC4-220ENST00000488017 GSTO2Q9H4Y5 243 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 TOPORSQ9NS56 1045 aaPredicted RBP4.75□□□□□ -1.65
SMC4-220ENST00000488017 TBC1D30Q9Y2I9 924 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 ACTL7AQ9Y615 435 aa4.75□□□□□ -1.65
SMC4-220ENST00000488017 CDHR4A6H8M9 788 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 LINC00473A8K010 186 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 FCER1AP12319 257 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 MTHFD2P13995 350 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 KCNA2P16389 499 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 CCKBRP32239 447 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 SESN3P58005 492 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 PPP3CAQ08209 521 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 FHL1Q13642 323 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 ETFDHQ16134 617 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 C21orf62-AS1Q17RA5 79 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 MUM1Q2TAK8 710 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP4.74□□□□□ -1.65
SMC4-220ENST00000488017 NEK8Q86SG6 692 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 HOMER1Q86YM7 354 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 TOR1AIP2Q8NFQ8 470 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 NLGN4YQ8NFZ3 816 aaPredicted RBP4.74□□□□□ -1.65
SMC4-220ENST00000488017 SLC30A5Q8TAD4 765 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 TBC1D15Q8TC07 691 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 LPIN2Q92539 896 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 TMEM125Q96AQ2 219 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 KRTAP4-4Q9BYR3 166 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 LDAHQ9H6V9 325 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 IFT122Q9HBG6 1241 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 PADI4Q9UM07 663 aa4.74□□□□□ -1.65
SMC4-220ENST00000488017 CNTNAP2Q9UHC6 1331 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 GPR32O75388 356 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 GATA3P23771 443 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 CERS1P27544 350 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 PCSK1P29120 753 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 CCT2P78371 535 aaKnown RBP4.73□□□□□ -1.65
SMC4-220ENST00000488017 FPGSQ05932 587 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 SLC44A4Q53GD3 710 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 ZNF782Q6ZMW2 699 aaPredicted RBP4.73□□□□□ -1.65
SMC4-220ENST00000488017 C16orf86Q6ZW13 317 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 RGMAQ96B86 450 aa4.73□□□□□ -1.65
SMC4-220ENST00000488017 ACE2Q9BYF1 805 aaPredicted RBP4.73□□□□□ -1.65
SMC4-220ENST00000488017 WDR27A2RRH5 827 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 ULK1O75385 1050 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 NTN1O95631 604 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 CHRM2P08172 466 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 NXPH1P58417 271 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 MTM1Q13496 603 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 DACT2Q5SW24 774 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 TSHZ1Q6ZSZ6 1077 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 RASAL3Q86YV0 1011 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 MYCBPAPQ8TBZ2 947 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 DENND1AQ8TEH3 1009 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 DNAJC2Q99543 621 aaKnown RBP4.72□□□□□ -1.65
SMC4-220ENST00000488017 ADI1Q9BV57 179 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 ZBTB21Q9ULJ3 1066 aa4.72□□□□□ -1.65
SMC4-220ENST00000488017 BPIP17213 487 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 EPHB2P29323 1055 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 MCAMP43121 646 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 ITIH3Q06033 890 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 MGAT2Q10469 447 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 DYRK1AQ13627 763 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 ATP2B3Q16720 1220 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 DHX37Q8IY37 1157 aaKnown RBP4.71□□□□□ -1.66
SMC4-220ENST00000488017 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.71□□□□□ -1.66
SMC4-220ENST00000488017 KLC4Q9NSK0 619 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 ST3GAL5Q9UNP4 418 aa4.71□□□□□ -1.66
SMC4-220ENST00000488017 TCRBV7S2A1N4TA0A589 114 aa4.7□□□□□ -1.66
SMC4-220ENST00000488017 URI1O94763 535 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms