RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 POU5F1Q01860 360 aaKnown RBP15.99■□□□□ 0.15
USP4-212ENST00000486549 SMAD4Q13485 552 aaKnown RBP15.99■□□□□ 0.15
USP4-212ENST00000486549 PSMD5Q16401 504 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 RDH13Q8NBN7 331 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 CASP10Q92851 521 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 FAM84AQ96KN4 292 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 PDE11AQ9HCR9 933 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP15.99■□□□□ 0.15
USP4-212ENST00000486549 C2CD2Q9Y426 696 aa15.99■□□□□ 0.15
USP4-212ENST00000486549 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.99■□□□□ 0.15
USP4-212ENST00000486549 MUC3AQ02505 3323 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 ZNF233A6NK53 670 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 SPDYE4A6NLX3 237 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 KIF20AO95235 890 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 SMC2O95347 1197 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 ALADP13716 330 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 FGFR3P22607 806 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 CLCN4P51793 760 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 UBE2HP62256 183 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 SNRPFP62306 86 aaKnown RBP15.98■□□□□ 0.15
USP4-212ENST00000486549 KCNC3Q14003 757 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 SNRNP35Q16560 246 aaKnown RBP15.98■□□□□ 0.15
USP4-212ENST00000486549 LMBRD2Q68DH5 695 aaPredicted RBP15.98■□□□□ 0.15
USP4-212ENST00000486549 ANKRD54Q6NXT1 300 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 PPFIBP1Q86W92 1011 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 PALB2Q86YC2 1186 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 SMYD4Q8IYR2 804 aaPredicted RBP15.98■□□□□ 0.15
USP4-212ENST00000486549 XXYLT1Q8NBI6 393 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 GOLGA5Q8TBA6 731 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 LNX1Q8TBB1 728 aaPredicted RBP15.98■□□□□ 0.15
USP4-212ENST00000486549 PIK3R5Q8WYR1 880 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 SMARCE1Q969G3 411 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 MSLNLQ96KJ4 702 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 RXFP1Q9HBX9 757 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 RMND1Q9NWS8 449 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 DPP3Q9NY33 737 aa15.98■□□□□ 0.15
USP4-212ENST00000486549 CGNQ9P2M7 1197 aaKnown RBP15.98■□□□□ 0.15
USP4-212ENST00000486549 SCN1AP35498 2009 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 EXOC3O60645 756 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 IL9P15248 144 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 CREMQ03060 361 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 SMAD2Q15796 467 aaKnown RBP15.97■□□□□ 0.15
USP4-212ENST00000486549 C9orf57Q5W0N0 161 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 TMEM184AQ6ZMB5 413 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 NT5DC4Q86YG4 428 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 ADHFE1Q8IWW8 467 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 SLC22A17Q8WUG5 538 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 SUSD3Q96L08 255 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 KCTD10Q9H3F6 313 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 KIAA1586Q9HCI6 787 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 PCDHA5Q9Y5H7 936 aa15.97■□□□□ 0.15
USP4-212ENST00000486549 BDP1A6H8Y1 2624 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 PDXKO00764 312 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 MBTPS2O43462 519 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 GLUD1P00367 558 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 TMEM191BP0C7N4 346 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 SPATA31D3P0C874 917 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 PDXDC1Q6P996 788 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 DSTYKQ6XUX3 929 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 SPATA31D4Q6ZUB0 917 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 C12orf56Q8IXR9 622 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 GPR65Q8IYL9 337 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 C12orf76Q8N812 135 aaPredicted RBP15.96■□□□□ 0.15
USP4-212ENST00000486549 CACTINQ8WUQ7 758 aaKnown RBP15.96■□□□□ 0.15
USP4-212ENST00000486549 FBXL18Q96ME1 805 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 GSDMAQ96QA5 445 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 MTMR12Q9C0I1 747 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 MAN1C1Q9NR34 630 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 FNIP2Q9P278 1114 aa15.96■□□□□ 0.15
USP4-212ENST00000486549 TSC2P49815 1807 aa15.96■□□□□ 0.14
USP4-212ENST00000486549 PTPRJQ12913 1337 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 PI4K2BG5E9Z4 385 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 PIRO00625 290 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 SYN3O14994 580 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 ADAM12O43184 909 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 CALUO43852 315 aaPredicted RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 NR3C1P04150 777 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 ITGB3P05106 788 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 DLATP10515 647 aaKnown RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 HOXB8P17481 243 aaPredicted RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 POLR2BP30876 1174 aaKnown RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 CYP24A1Q07973 514 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 SURF1Q15526 300 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 VARS2Q5ST30 1063 aaKnown RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 RARS2Q5T160 578 aaKnown RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 ISM2Q6H9L7 571 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 SYCE2Q6PIF2 218 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 ANKS3Q6ZW76 656 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 GUF1Q8N442 669 aaKnown RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 SMRP1Q8NCR6 262 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 CCDC127Q96BQ5 260 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 ANKRD36BP1Q96IX9 119 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 CLSTN3Q9BQT9 956 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 DZANK1Q9NVP4 752 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 MTRRQ9UBK8 725 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 PCDHB8Q9UN66 801 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 USP15Q9Y4E8 981 aaPredicted RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 TIMM13Q9Y5L4 95 aaPredicted RBP15.95■□□□□ 0.14
USP4-212ENST00000486549 CDY1Q9Y6F8 540 aa15.95■□□□□ 0.14
USP4-212ENST00000486549 MTCL1Q9Y4B5 1905 aaKnown RBP15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms