RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 CXCL11O14625 94 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 NOL3O60936 208 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 CYP2C9P11712 490 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 CA4P22748 312 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 PMS2P54278 862 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 RBP5P82980 135 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 TMEM132DQ14C87 1099 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 MAP3K21Q5TCX8 1036 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 GDAP1Q8TB36 358 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 PRPF31Q8WWY3 499 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 ZNF560Q96MR9 790 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 POP1Q99575 1024 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 ECT2Q9H8V3 914 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 STOML1Q9UBI4 398 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 AFG3L2Q9Y4W6 797 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 CAPN6Q9Y6Q1 641 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 DCTN3O75935 186 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 COMTP21964 271 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 FBXO16Q8IX29 292 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 GLIS3Q8NEA6 775 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 FAM167BQ9BTA0 163 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 TMEM117Q9H0C3 514 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 PRMT7Q9NVM4 692 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 TACC3Q9Y6A5 838 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 GARSP41250 739 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 CLCN3P51790 818 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 GPS1Q13098 491 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 SWT1Q5T5J6 900 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 RWDD4Q6NW29 188 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 PDCD7Q8N8D1 485 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 ARL8AQ96BM9 186 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 TRIM51Q9BSJ1 452 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 PACSIN1Q9BY11 444 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 IPO11Q9UI26 975 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 WDR91A4D1P6 747 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 RRN3P2A6NIE6 340 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 RASSF10A6NK89 507 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 RGS7P49802 495 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 CDH6P55285 790 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 NLRP11P59045 1033 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 MKRN4PQ13434 485 aaPredicted RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 SLC5A5Q92911 643 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 XPO6Q96QU8 1125 aaKnown RBP11.64□□□□□ -0.55
HDAC6-228ENST00000486227 PITPNM3Q9BZ71 974 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 SPATC1LQ9H0A9 340 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 CPA4Q9UI42 421 aa11.64□□□□□ -0.55
HDAC6-228ENST00000486227 MAP3K7O43318 606 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 SRGAP2BP0DMP2 458 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 CPB1P15086 417 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 PRLRP16471 622 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 ARL4CP56559 192 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 BCAR1P56945 870 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 HERVK_113P62684 666 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 VEPH1Q14D04 833 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 ARRDC4Q8NCT1 418 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 PFDN1O60925 122 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 POTEAQ6S8J7 498 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 BZW1Q7L1Q6 419 aaKnown RBP11.63□□□□□ -0.55
HDAC6-228ENST00000486227 THAP2Q9H0W7 228 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 DHX35Q9H5Z1 703 aaKnown RBP11.63□□□□□ -0.55
HDAC6-228ENST00000486227 SMYD2Q9NRG4 433 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 LMO7Q8WWI1 1683 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 GOLGA8CPA6NN73 597 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 SLC1A1P43005 524 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 DHX34Q14147 1143 aaKnown RBP11.63□□□□□ -0.55
HDAC6-228ENST00000486227 DNAAF5Q86Y56 855 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 ZNF384Q8TF68 577 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 KLC2Q9H0B6 622 aa11.63□□□□□ -0.55
HDAC6-228ENST00000486227 CCT8L1PA6NM43 557 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 PHF20L1A8MW92 1017 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ADM5C9JUS6 153 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 PPP1R12AO14974 1030 aaPredicted RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 CREB3O43889 395 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 DIAPH2O60879 1101 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 CNTN2Q02246 1040 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 KRT17Q04695 432 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 DYNC1I2Q13409 638 aaKnown RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 HSP90AA5PQ58FG0 334 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 RAPH1Q70E73 1250 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 NIF3L1Q9GZT8 377 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 RANBP17Q9H2T7 1088 aaKnown RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 Q9H521 79 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 CHD2O14647 1828 aaKnown RBP11.62□□□□□ -0.55
HDAC6-228ENST00000486227 SGPL1O95470 568 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 PDGFRBP09619 1106 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 CCND1P24385 295 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 GTF2H1P32780 548 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ZNF449Q6P9G9 518 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ZNF507Q8TCN5 953 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 TAS1R2Q8TE23 839 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ETNK1Q9HBU6 452 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 KCNMB3Q9NPA1 279 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 LMCD1Q9NZU5 365 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 STAP1Q9ULZ2 295 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ARHGAP42A6NI28 874 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 KLRC4O43908 158 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 UPP2O95045 317 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 LCP1P13796 627 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 KIAA1755Q5JYT7 1200 aa11.62□□□□□ -0.55
HDAC6-228ENST00000486227 ZC3H18Q86VM9 953 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms