RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 PODXLO00592 558 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 PRRG1O14668 218 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 SLC16A4O15374 487 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 TRAPPC3O43617 180 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 MUTP22033 750 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 PROZP22891 400 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 FCARP24071 287 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 RAD51AP2Q09MP3 1159 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 SPEM2Q0P670 501 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 GRM2Q14416 872 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 SLC8B1Q6J4K2 584 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 PRR23BQ6ZRT6 265 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 UROC1Q96N76 676 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 LLPHQ9BRT6 129 aaKnown RBP15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 CHRDQ9H2X0 955 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 ZFP14Q9HCL3 533 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 PARD6AQ9NPB6 346 aa15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 AVENQ9NQS1 362 aaPredicted RBP15.16■□□□□ 0.02
SQSTM1-208ENST00000485412 ARHGEF37A1IGU5 675 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 ABLIM3O94929 683 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 NEFLP07196 543 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 TGM1P22735 817 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 U2AF2P26368 475 aaKnown RBP eCLIP15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 TRAPPC10P48553 1259 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 FZD5Q13467 585 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 GNL2Q13823 731 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 ST3GAL2Q16842 350 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 PRSS36Q5K4E3 855 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 LAIR1Q6GTX8 287 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 RINT1Q6NUQ1 792 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 C1orf186Q6ZWK4 172 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 CORO1BQ9BR76 489 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 IER2Q9BTL4 223 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 TRMT61BQ9BVS5 477 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 CCDC94Q9BW85 323 aaPredicted RBP15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 MRPL4Q9BYD3 311 aaKnown RBP15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 HAPLN2Q9GZV7 340 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 KMT5AQ9NQR1 393 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 TUBGCP4Q9UGJ1 667 aa15.15■□□□□ 0.02
SQSTM1-208ENST00000485412 KIF26AQ9ULI4 1882 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 MAP1BP46821 2468 aaKnown RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 ZNF197O14709 1029 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 ADRB1P08588 477 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 KCNE1P15382 129 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 CCR3P51677 355 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 YARSP54577 528 aaKnown RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 SPAG1Q07617 926 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 DMP1Q13316 513 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 MRPL58Q14197 206 aaKnown RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 PDZD4Q76G19 769 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 APBB1IPQ7Z5R6 666 aaPredicted RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 HS6ST3Q8IZP7 471 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 CELF5Q8N6W0 485 aaKnown RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 ZNF461Q8TAF7 563 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 NETO1Q8TDF5 533 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 IRF7Q92985 503 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 ZSWIM3Q96MP5 696 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 PNMA5Q96PV4 448 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 PLIN2Q99541 437 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 TMEM134Q9H6X4 195 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 LMAN1LQ9HAT1 526 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 CNTN3Q9P232 1028 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 ANKFY1Q9P2R3 1169 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 FBXL5Q9UKA1 691 aa15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 NOL7Q9UMY1 257 aaKnown RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.14■□□□□ 0.01
SQSTM1-208ENST00000485412 NPHP3-ACAD11A0A0J9YXS1 232 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 MOSPD3O75425 235 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 VNN2O95498 520 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 MCF2P10911 925 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 TDGF1P13385 188 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 GJA1P17302 382 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 GDI1P31150 447 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 HMGN5P82970 282 aaKnown RBP15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 CACNB1Q02641 598 aaPredicted RBP15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 PDIA5Q14554 519 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 ZRSR1Q15695 479 aaKnown RBP15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 SLC10A6Q3KNW5 377 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 PPM1JQ5JR12 505 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 FAM78AQ5JUQ0 283 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 MPZL3Q6UWV2 235 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 ELMOD1Q8N336 334 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 FAM184AQ8NB25 1140 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 LRRC15Q8TF66 581 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 FAM3CQ92520 227 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 CHAMP1Q96JM3 812 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 ACAP3Q96P50 834 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 CYP4F11Q9HBI6 524 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 TOPORSQ9NS56 1045 aaPredicted RBP15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 DNM3Q9UQ16 869 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 INSL5Q9Y5Q6 135 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 PIAS3Q9Y6X2 628 aa15.13■□□□□ 0.01
SQSTM1-208ENST00000485412 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 SLC30A4O14863 429 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 LRP3O75074 770 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 RETP07949 1114 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 CXCL8P10145 99 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 ATF2P15336 505 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 KCNA4P22459 653 aa15.12■□□□□ 0.01
SQSTM1-208ENST00000485412 GUCY2FP51841 1108 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms