RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 NSMFQ6X4W1 530 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 DENND1AQ8TEH3 1009 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 TRABDQ9H4I3 376 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 SLCO1B3Q9NPD5 702 aa14.11□□□□□ -0.15
USP40-214ENST00000483519 CYP26A1O43174 497 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 ECE2O60344 883 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 ENTPD5O75356 428 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 UPP2O95045 317 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 HLA-DOAP06340 250 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 KCNA3P22001 575 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 SP100P23497 879 aaPredicted RBP14.1□□□□□ -0.15
USP40-214ENST00000483519 RRM1P23921 792 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 MAPK4P31152 587 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 MAGEA4P43358 317 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 TUBP50607 506 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 MFAP3P55082 362 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 PPP3CAQ08209 521 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 TRAF1Q13077 416 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 TAF1BQ53T94 588 aaPredicted RBP14.1□□□□□ -0.15
USP40-214ENST00000483519 SYDE2Q5VT97 1194 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 SLC47A2Q86VL8 602 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 FBXO11Q86XK2 927 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 TDRPQ86YL5 185 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 SUPT20HQ8NEM7 779 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 ZNF398Q8TD17 642 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 SPOCK2Q92563 424 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 ZNF333Q96JL9 665 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 CCDC17Q96LX7 622 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 PWWP2AQ96N64 755 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 TTC25Q96NG3 672 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 SCOCQ9UIL1 159 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 CYP3A4P08684 503 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 SKIP12755 728 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 MXI1P50539 228 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 SLFN13Q68D06 897 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 CYP4F22Q6NT55 531 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 KAT5Q92993 513 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 NACC1Q96RE7 527 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 RBM15Q96T37 977 aaKnown RBP eCLIP14.1□□□□□ -0.15
USP40-214ENST00000483519 NMRK1Q9NWW6 199 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 DLGAP2Q9P1A6 1054 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 ANAPC7Q9UJX3 599 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 GGA1Q9UJY5 639 aa14.1□□□□□ -0.15
USP40-214ENST00000483519 C2CD2LO14523 706 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 GSTA2P09210 222 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 KRT15P19012 456 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 SLC1A1P43005 524 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 OTOP1Q7RTM1 612 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 PPM1KQ8N3J5 372 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 ZCCHC9Q8N567 271 aaKnown RBP14.09□□□□□ -0.15
USP40-214ENST00000483519 FAM136AQ96C01 138 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 TMEM206Q9H813 350 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 DDX4Q9NQI0 724 aaKnown RBP14.09□□□□□ -0.15
USP40-214ENST00000483519 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP40-214ENST00000483519 BCS1LQ9Y276 419 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 C2CD2Q9Y426 696 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 COL11A2P13942 1736 aaPredicted RBP14.09□□□□□ -0.15
USP40-214ENST00000483519 K7ENM7 598 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 CHMP2AO43633 222 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 CYP11B1P15538 503 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 CA4P22748 312 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 PPP2R5CQ13362 524 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 NBPF20Q3BBV1 942 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 USH1GQ495M9 461 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 RBM26Q5T8P6 1007 aaKnown RBP14.09□□□□□ -0.15
USP40-214ENST00000483519 HHATQ5VTY9 493 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 ACAD10Q6JQN1 1059 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 C4orf50Q6ZRC1 276 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 NLRP9Q7RTR0 991 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 LARGE2Q8N3Y3 721 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 CYP2W1Q8TAV3 490 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 SHC3Q92529 594 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 KIFAP3Q92845 792 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 FAM81BQ96LP2 452 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 TRAPPC9Q96Q05 1148 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 TUBB6Q9BUF5 446 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 STRA6Q9BX79 667 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 NEU2Q9Y3R4 380 aa14.09□□□□□ -0.15
USP40-214ENST00000483519 ZWINTO95229 277 aa14.08□□□□□ -0.15
USP40-214ENST00000483519 TROVE2P10155 538 aaKnown RBP eCLIP14.08□□□□□ -0.15
USP40-214ENST00000483519 ALCAMQ13740 583 aa14.08□□□□□ -0.15
USP40-214ENST00000483519 PDCD2Q16342 344 aaPredicted RBP14.08□□□□□ -0.15
USP40-214ENST00000483519 CCNG2Q16589 344 aa14.08□□□□□ -0.15
USP40-214ENST00000483519 PCIF1Q9H4Z3 704 aa14.08□□□□□ -0.15
USP40-214ENST00000483519 PPCSQ9HAB8 311 aa14.08□□□□□ -0.15
USP40-214ENST00000483519 KIAA1586Q9HCI6 787 aa14.08□□□□□ -0.15
USP40-214ENST00000483519 WDR35Q9P2L0 1181 aa14.08□□□□□ -0.15
USP40-214ENST00000483519 C6orf229H3BNL8 230 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 PMM2O15305 246 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 CCDC22O60826 627 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 RTN3O95197 1032 aaPredicted RBP14.08□□□□□ -0.16
USP40-214ENST00000483519 MYH11P35749 1972 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 PRELPP51888 382 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 OCRLQ01968 901 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 ATRNL1Q5VV63 1379 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 TMEM174Q8WUU8 243 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 KREMEN1Q96MU8 473 aa14.08□□□□□ -0.16
USP40-214ENST00000483519 IGLV3-22A0A075B6J6 115 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 ZBTB39O15060 712 aa14.07□□□□□ -0.16
USP40-214ENST00000483519 RPA3P35244 121 aaPredicted RBP14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms