RNA–Protein interactions for RNA: ENST00000481910.1

HPS4-212, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 1,914 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-212ENST00000481910 MAN2A1Q16706 1144 aa12.5□□□□□ -0.41
HPS4-212ENST00000481910 C1orf220Q5T0J3 134 aa12.5□□□□□ -0.41
HPS4-212ENST00000481910 C18orf25Q96B23 403 aaPredicted RBP12.5□□□□□ -0.41
HPS4-212ENST00000481910 FAM193BQ96PV7 902 aaPredicted RBP12.5□□□□□ -0.41
HPS4-212ENST00000481910 MTMR12Q9C0I1 747 aa12.5□□□□□ -0.41
HPS4-212ENST00000481910 VPS16Q9H269 839 aa12.5□□□□□ -0.41
HPS4-212ENST00000481910 GOLGA6AQ9NYA3 693 aa12.5□□□□□ -0.41
HPS4-212ENST00000481910 TAB2Q9NYJ8 693 aa12.5□□□□□ -0.41
HPS4-212ENST00000481910 LIMA1Q9UHB6 759 aaKnown RBP12.5□□□□□ -0.41
HPS4-212ENST00000481910 INSL6Q9Y581 213 aa12.5□□□□□ -0.41
HPS4-212ENST00000481910 TLL1O43897 1013 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 PHACTR2O75167 634 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 ZRANB2O95218 330 aaKnown RBP eCLIP12.49□□□□□ -0.41
HPS4-212ENST00000481910 SERPINC1P01008 464 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 GTF2H1P32780 548 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 SOX4Q06945 474 aaPredicted RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 BTG3Q14201 252 aaPredicted RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 C11orf91Q3C1V1 193 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 VWA3BQ502W6 1294 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 SV2AQ7L0J3 742 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 ZNF280BQ86YH2 543 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 LRRC43Q8N309 656 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 BEST2Q8NFU1 509 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 NDST4Q9H3R1 872 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 DPP3Q9NY33 737 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 TUBGCP4Q9UGJ1 667 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 DDHD2O94830 711 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 AFPP02771 609 aaKnown RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 C4BPAP04003 597 aaKnown RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 CYP3A5P20815 502 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 FMO5P49326 533 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 COPB1P53618 953 aaKnown RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 HTRA4P83105 476 aaPredicted RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 TUSC3Q13454 348 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 BIRC3Q13489 604 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 NAB2Q15742 525 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 HS1BP3Q53T59 392 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 MIIPQ5JXC2 388 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 ICE2Q659A1 982 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 KRT39Q6A163 491 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 CHRDL2Q6WN34 429 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 TRAPPC11Q7Z392 1133 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 CMTR2Q8IYT2 770 aaKnown RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 RAD9AQ99638 391 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 RC3H2Q9HBD1 1191 aaKnown RBP12.49□□□□□ -0.41
HPS4-212ENST00000481910 GOLGA2P5Q9HBQ8 144 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 TMEM8AQ9HCN3 771 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 PAXBP1Q9Y5B6 917 aa12.49□□□□□ -0.41
HPS4-212ENST00000481910 GRXCR1A8MXD5 290 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 KRT19P08727 400 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 NOP2P46087 812 aaKnown RBP12.48□□□□□ -0.41
HPS4-212ENST00000481910 MXI1P50539 228 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 GUCY2FP51841 1108 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 FANCCQ00597 558 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 CBWD6Q4V339 395 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 CBWD3Q5JTY5 395 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 CBWD5Q5RIA9 395 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 TDRD10Q5VZ19 366 aaKnown RBP12.48□□□□□ -0.41
HPS4-212ENST00000481910 ZNF771Q7L3S4 317 aaPredicted RBP12.48□□□□□ -0.41
HPS4-212ENST00000481910 TDHQ8IZJ6 230 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 TMEM130Q8N3G9 435 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 C1orf127Q8N9H9 656 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 NRDE2Q9H7Z3 1164 aa12.48□□□□□ -0.41
HPS4-212ENST00000481910 R3HCC1Q9Y3T6 440 aaKnown RBP12.48□□□□□ -0.41
HPS4-212ENST00000481910 CASTOR2A6NHX0 329 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 HMGB1P1B2RPK0 211 aaPredicted RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 ZC3H11AO75152 810 aaKnown RBP eCLIP12.47□□□□□ -0.41
HPS4-212ENST00000481910 CST3P01034 146 aaPredicted RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 ITGB3P05106 788 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 CD151P48509 253 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 RABGGTBP53611 331 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 DSC1Q08554 894 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 CETN1Q12798 172 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 TRPC3Q13507 836 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 ZACNQ401N2 412 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 FILIP1LQ4L180 1135 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 SPOUT1Q5T280 376 aaKnown RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 FAM109BQ6ICB4 259 aaPredicted RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 C15orf39Q6ZRI6 1047 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 APTXQ7Z2E3 356 aaKnown RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 COLGALT2Q8IYK4 626 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 CXorf38Q8TB03 319 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 RABGGTAQ92696 567 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 CALR3Q96L12 384 aaKnown RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 HCSTQ9UBK5 93 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 CACNG4Q9UBN1 327 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 DNAJB4Q9UDY4 337 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 ITGA11Q9UKX5 1188 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 N4BP1O75113 896 aaKnown RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 ALDH2P05091 517 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 RPL9P32969 192 aaKnown RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 OR1G1P47890 313 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 ALDH7A1P49419 539 aaKnown RBP12.47□□□□□ -0.41
HPS4-212ENST00000481910 CLCNKBP51801 687 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 UBASH3AP57075 661 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 SCARA3Q6AZY7 606 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 ZSCAN30Q86W11 494 aa12.47□□□□□ -0.41
HPS4-212ENST00000481910 FIBCD1Q8N539 461 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms