RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 ARHGAP6O43182 974 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 OFD1O75665 1012 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 CST3P01034 146 aaPredicted RBP10.92□□□□□ -0.66
USP39-215ENST00000481409 ITGB3P05106 788 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 MLH1P40692 756 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 PRKCIP41743 596 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 KLK7P49862 253 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 BPIFB4P59827 614 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 ZNF699Q32M78 642 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 SV2CQ496J9 727 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 ZNF667Q5HYK9 610 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 IQCEQ6IPM2 695 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 PHLDB3Q6NSJ2 640 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 RRAGAQ7L523 313 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 CCDC170Q8IYT3 715 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 ABI1Q8IZP0 508 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 PPM1KQ8N3J5 372 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 CXorf38Q8TB03 319 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 CPLX3Q8WVH0 158 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 LINC01599Q8WXQ3 324 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 SHC3Q92529 594 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 SEMA4DQ92854 862 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 TRIM43Q96BQ3 446 aaPredicted RBP10.92□□□□□ -0.66
USP39-215ENST00000481409 SCLYQ96I15 445 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 ZMAT2Q96NC0 199 aaKnown RBP10.92□□□□□ -0.66
USP39-215ENST00000481409 GAD1Q99259 594 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 BAG1Q99933 345 aaPredicted RBP10.92□□□□□ -0.66
USP39-215ENST00000481409 APOL6Q9BWW8 343 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 OSBPL7Q9BZF2 842 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 NIF3L1Q9GZT8 377 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 XYLT2Q9H1B5 865 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 UBE2TQ9NPD8 197 aaPredicted RBP10.92□□□□□ -0.66
USP39-215ENST00000481409 IL23AQ9NPF7 189 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 GDAP2Q9NXN4 497 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 SIX4Q9UIU6 781 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 LRFN2Q9ULH4 789 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 CNTN6Q9UQ52 1028 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 FHOD1Q9Y613 1164 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 LTBP2Q14767 1821 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 TRIP11Q15643 1979 aa10.92□□□□□ -0.66
USP39-215ENST00000481409 TTC3P53804 2025 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 MICAL3Q7RTP6 2002 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 F8VZ95 297 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 PTGESO14684 152 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 EPHB6O15197 1021 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 AMHP03971 560 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 SERPING1P05155 500 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 KRT19P08727 400 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 POLR2BP30876 1174 aaKnown RBP10.91□□□□□ -0.66
USP39-215ENST00000481409 SOX5P35711 763 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 TAF6P49848 677 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 ADKP55263 362 aaKnown RBP10.91□□□□□ -0.66
USP39-215ENST00000481409 TNNC1P63316 161 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 TUSC3Q13454 348 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 CUL2Q13617 745 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 RAPGEF1Q13905 1077 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 DRAP1Q14919 205 aaPredicted RBP10.91□□□□□ -0.66
USP39-215ENST00000481409 NOMO2Q5JPE7 1267 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 C9orf57Q5W0N0 161 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 LMBRD2Q68DH5 695 aaPredicted RBP10.91□□□□□ -0.66
USP39-215ENST00000481409 VPS36Q86VN1 386 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 CRIPAKQ8N1N5 446 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 TXLNBQ8N3L3 684 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 GSTCDQ8NEC7 633 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 HPDLQ96IR7 371 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 BCO2Q9BYV7 579 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 NLRC4Q9NPP4 1024 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 PRDM5Q9NQX1 630 aaPredicted RBP10.91□□□□□ -0.66
USP39-215ENST00000481409 AGAP1Q9UPQ3 857 aa10.91□□□□□ -0.66
USP39-215ENST00000481409 TDRD15B5MCY1 1934 aaKnown RBP10.91□□□□□ -0.66
USP39-215ENST00000481409 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.9□□□□□ -0.66
USP39-215ENST00000481409 LRRC53A6NM62 1247 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 TMEM189-UBE2V1I3L0A0 370 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 TULP1O00294 542 aaPredicted RBP10.9□□□□□ -0.66
USP39-215ENST00000481409 CCP110O43303 1012 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 CYLC1P35663 651 aaPredicted RBP10.9□□□□□ -0.66
USP39-215ENST00000481409 MYL6P60660 151 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 FPGSQ05932 587 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 NAB2Q15742 525 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 ASIC2Q16515 512 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 PPP1R2P3Q6NXS1 205 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 PSRC1Q6PGN9 363 aaPredicted RBP10.9□□□□□ -0.66
USP39-215ENST00000481409 ZNF677Q86XU0 584 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 FAM71AQ8IYT1 594 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 ABHD8Q96I13 439 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 TMEM175Q9BSA9 504 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 MTIF3Q9H2K0 278 aaKnown RBP10.9□□□□□ -0.66
USP39-215ENST00000481409 KLK14Q9P0G3 267 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 SCN5AQ14524 2016 aa10.9□□□□□ -0.66
USP39-215ENST00000481409 ATP8B3O60423 1300 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 KPNA7A9QM74 516 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 EVI5O60447 810 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 TACC1O75410 805 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 IPO7O95373 1038 aaKnown RBP10.89□□□□□ -0.67
USP39-215ENST00000481409 SKILP12757 684 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 CSF2RAP15509 400 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 SCNN1GP51170 649 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 DSC1Q08554 894 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 KLHL30Q0D2K2 578 aa10.89□□□□□ -0.67
USP39-215ENST00000481409 WDR72Q3MJ13 1102 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms