RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 LEMD2Q8NC56 503 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 RSAD2Q8WXG1 361 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 DDX12PQ92771 950 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 C18orf25Q96B23 403 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 KIF12Q96FN5 646 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 SHDQ96IW2 340 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 RPF1Q9H9Y2 349 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 ARHGEF3Q9NR81 526 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 SEL1LQ9UBV2 794 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 AFF4Q9UHB7 1163 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 FBXL5Q9UKA1 691 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 POLIQ9UNA4 740 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 DERAQ9Y315 318 aa13.21□□□□□ -0.29
SQSTM1-207ENST00000481335 DMDP11532 3685 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 TSC2P49815 1807 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 RIF1Q5UIP0 2472 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 TCHHQ07283 1943 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 A0A0B4J269 797 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 NPHP3-ACAD11A0A0J9YXS1 232 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 KRBA1A5PL33 1030 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 H0Y858 1186 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 I3L4J1 428 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 PRRG1O14668 218 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 ZNF197O14709 1029 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 OAZ2O95190 189 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 CFHP08603 1231 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 PTPN2P17706 415 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 RFX1P22670 979 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 IGFBP6P24592 240 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 MARCKSP29966 332 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 CACNB1Q02641 598 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 YWHAHQ04917 246 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 MCM6Q14566 821 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 PTPAQ15257 358 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 CTXN3Q4LDR2 81 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 SLFN12LQ6IEE8 588 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 NPAS3Q8IXF0 933 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 ELMOD1Q8N336 334 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 GPR152Q8TDT2 470 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 FGF14Q92915 247 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 FIZ1Q96SL8 496 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 HAPLN2Q9GZV7 340 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 ASB7Q9H672 318 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 DNMT3BQ9UBC3 853 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 TUBGCP4Q9UGJ1 667 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 MRPS23Q9Y3D9 190 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 SRPRBQ9Y5M8 271 aaKnown RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 INSL5Q9Y5Q6 135 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 FANCMQ8IYD8 2048 aa13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 ZFHX2Q9C0A1 2572 aaPredicted RBP13.2□□□□□ -0.3
SQSTM1-207ENST00000481335 ECI2O75521 394 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 RHOP08100 348 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 TYMPP19971 482 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 STARD6P59095 220 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 PRKCQQ04759 706 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 GRIN1Q05586 938 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 SPATA1Q5VX52 437 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 NT5DC4Q86YG4 428 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 BEST2Q8NFU1 509 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 LRRC15Q8TF66 581 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 PHOX2BQ99453 314 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 MSTO1Q9BUK6 570 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 ZSCAN16Q9H4T2 348 aaPredicted RBP13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 TBC1D17Q9HA65 648 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 CYP4F11Q9HBI6 524 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 CPSF3Q9UKF6 684 aaKnown RBP13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 C2CD2Q9Y426 696 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 STYXL1Q9Y6J8 313 aa13.19□□□□□ -0.3
SQSTM1-207ENST00000481335 OR6C75A6NL08 312 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 GFRA3O60609 400 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 PDIA4P13667 645 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 GAP43P17677 238 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 SYT1P21579 422 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 MAGEA9P43362 315 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 NTHL1P78549 312 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 RESTQ13127 1097 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 PLD1Q13393 1074 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 DHX8Q14562 1220 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 POSTNQ15063 836 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 ENOX2Q16206 610 aaKnown RBP13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 SEZ6Q53EL9 994 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 IQCEQ6IPM2 695 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 PARM1Q6UWI2 310 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 DTWD2Q8NBA8 298 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 ITFG1Q8TB96 612 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 OSBPL6Q9BZF3 934 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 HCFC1R1Q9NWW0 138 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 HSFX1Q9UBD0 423 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 FBXO2Q9UK22 296 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 CA14Q9ULX7 337 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 SCN1AP35498 2009 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 PTPRZ1P23471 2315 aaPredicted RBP13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 CFAP54Q96N23 3096 aa13.18□□□□□ -0.3
SQSTM1-207ENST00000481335 LACTBL1A8MY62 500 aa13.17□□□□□ -0.3
SQSTM1-207ENST00000481335 PPP1R37O75864 691 aa13.17□□□□□ -0.3
SQSTM1-207ENST00000481335 ODC1P11926 461 aa13.17□□□□□ -0.3
SQSTM1-207ENST00000481335 CPB1P15086 417 aa13.17□□□□□ -0.3
SQSTM1-207ENST00000481335 TNFSF9P41273 254 aa13.17□□□□□ -0.3
SQSTM1-207ENST00000481335 EPHA5P54756 1037 aa13.17□□□□□ -0.3
SQSTM1-207ENST00000481335 ADCY1Q08828 1119 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms