RNA–Protein interactions for RNA: ENST00000479868.6

SEC13-216, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 1 (best)

Gene SEC13, Length 2,374 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-216ENST00000479868 INO80B-WBP1J3KQ70 363 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 THAP12O43422 761 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 HBP1O60381 514 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 IQCF3P0C7M6 154 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 MYBL1P10243 752 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 CHRNA3P32297 505 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 PTGIRP43119 386 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 SLC26A2P50443 739 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 OSTNP61366 133 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 GRM1Q13255 1194 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 SIX1Q15475 284 aaPredicted RBP13.88□□□□□ -0.19
SEC13-216ENST00000479868 DAB2IPQ5VWQ8 1189 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 SH2D3CQ8N5H7 860 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 UBR7Q8N806 425 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 CEP120Q8N960 986 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 SHCBP1Q8NEM2 672 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 MAGOHBQ96A72 148 aaKnown RBP13.88□□□□□ -0.19
SEC13-216ENST00000479868 SLC10A4Q96EP9 437 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 TRIM11Q96F44 468 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 IMPG2Q9BZV3 1241 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 INO80BQ9C086 356 aaPredicted RBP13.88□□□□□ -0.19
SEC13-216ENST00000479868 FZD8Q9H461 694 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 PTPRHQ9HD43 1115 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.88□□□□□ -0.197e-6■□□□□ 8.9
SEC13-216ENST00000479868 FAM187AA6NFU0 413 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 ASB14A6NK59 587 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 ACKR2O00590 384 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 HOXC6P09630 235 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 RARAP10276 462 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 ZNF132P52740 706 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 AP3M2P53677 418 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 HNRNPH2P55795 449 aaKnown RBP13.88□□□□□ -0.19
SEC13-216ENST00000479868 IGBP1P78318 339 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 ARHGAP1Q07960 439 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 ZSCAN26Q16670 478 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 ATF7IP2Q5U623 682 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 EEF1DP3Q658K8 133 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 CCDC137Q6PK04 289 aaKnown RBP13.88□□□□□ -0.19
SEC13-216ENST00000479868 MPZL3Q6UWV2 235 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 TSHZ1Q6ZSZ6 1077 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 TMC3Q7Z5M5 1100 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 OR2W6PQ8NHA6 318 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 LRRC45Q96CN5 670 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 PCYOX1Q9UHG3 505 aa13.88□□□□□ -0.19
SEC13-216ENST00000479868 PLXNB2O15031 1838 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 H0YGN5 161 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 CD58P19256 250 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 MBTD1Q05BQ5 628 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 DUOXA2Q1HG44 320 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 ZNF568Q3ZCX4 644 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 DNAJC21Q5F1R6 531 aaKnown RBP13.87□□□□□ -0.19
SEC13-216ENST00000479868 TAPT1Q6NXT6 567 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 TRIM72Q6ZMU5 477 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 EFCAB13Q8IY85 973 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 ZNF606Q8WXB4 792 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 JPH2Q9BR39 696 aaPredicted RBP13.87□□□□□ -0.19
SEC13-216ENST00000479868 ZNF408Q9H9D4 720 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 ZDHHC18Q9NUE0 388 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 ERAP1Q9NZ08 941 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 ADAM22Q9P0K1 906 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 NFS1Q9Y697 457 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 MYO1FO00160 1098 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 CSDE1O75534 798 aaKnown RBP13.87□□□□□ -0.19
SEC13-216ENST00000479868 C22orf31O95567 290 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 ADORA2AP29274 412 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 TFAMQ00059 246 aaKnown RBP13.87□□□□□ -0.19
SEC13-216ENST00000479868 PTP4A2Q12974 167 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 MKRN3Q13064 507 aaKnown RBP13.87□□□□□ -0.19
SEC13-216ENST00000479868 MAMLD1Q13495 774 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 TFDP1Q14186 410 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 CYP1B1Q16678 543 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 CEP85LQ5SZL2 805 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 MMS22LQ6ZRQ5 1243 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 TMEM192Q8IY95 271 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 GPRC5AQ8NFJ5 357 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 FMO2Q99518 471 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 PNMA3Q9UL41 463 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 SNX24Q9Y343 169 aa13.87□□□□□ -0.19
SEC13-216ENST00000479868 LOC102724159A0A0B4J2E5 919 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 GLTPD2A6NH11 291 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 O00370 1275 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 GJB6O95452 261 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 LGALS2P05162 132 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 POTEJP0CG39 1038 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 INSRRP14616 1297 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 DHX9Q08211 1270 aaKnown RBP13.86□□□□□ -0.19
SEC13-216ENST00000479868 PWP2Q15269 919 aaKnown RBP13.86□□□□□ -0.19
SEC13-216ENST00000479868 ZNF792Q3KQV3 632 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 ZNF394Q53GI3 561 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 MAMDC4Q6UXC1 1216 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 LEKR1Q6ZMV7 388 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 PHF13Q86YI8 300 aaPredicted RBP13.86□□□□□ -0.19
SEC13-216ENST00000479868 UBLCP1Q8WVY7 318 aaPredicted RBP13.86□□□□□ -0.19
SEC13-216ENST00000479868 PPP1R16BQ96T49 567 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 PDHXO00330 501 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 SHOX2O60902 331 aaPredicted RBP13.86□□□□□ -0.19
SEC13-216ENST00000479868 COILP38432 576 aaPredicted RBP13.86□□□□□ -0.19
SEC13-216ENST00000479868 KCNJ1P48048 391 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 LIN9Q5TKA1 542 aa13.86□□□□□ -0.19
SEC13-216ENST00000479868 LRRC31Q6UY01 552 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms