RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 KIF12Q96FN5 646 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 NUB1Q9Y5A7 615 aa20.22■□□□□ 0.83
COL7A1-209ENST00000474432 ARHGEF37A1IGU5 675 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 M0QZQ0 153 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 PPEF2O14830 753 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 TBCAO75347 108 aaKnown RBP20.21■□□□□ 0.83
COL7A1-209ENST00000474432 MCM4P33991 863 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 NASPP49321 788 aaPredicted RBP20.21■□□□□ 0.83
COL7A1-209ENST00000474432 RRAGBQ5VZM2 374 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 FGF13Q92913 245 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 SNX21Q969T3 373 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 NXPE3Q969Y0 559 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 PRRX2Q99811 253 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 CCDC39Q9UFE4 941 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 CDH7Q9ULB5 785 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 UBQLN1Q9UMX0 589 aaKnown RBP20.21■□□□□ 0.83
COL7A1-209ENST00000474432 PCDHB8Q9UN66 801 aa20.21■□□□□ 0.83
COL7A1-209ENST00000474432 KRBA1A5PL33 1030 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 PI15O43692 258 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 XYLBO75191 536 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 ATF2P15336 505 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 CLCN5P51795 746 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 PTPN5P54829 565 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 PPP2R3AQ06190 1150 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 KCNA1Q09470 495 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 KYAT1Q16773 422 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 SPATA1Q5VX52 437 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 ASTLQ6HA08 431 aaPredicted RBP20.2■□□□□ 0.82
COL7A1-209ENST00000474432 PARM1Q6UWI2 310 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 TCEAL8Q8IYN2 117 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 KRI1Q8N9T8 703 aaKnown RBP20.2■□□□□ 0.82
COL7A1-209ENST00000474432 FGF14Q92915 247 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 MSTO1Q9BUK6 570 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 ZSCAN16Q9H4T2 348 aaPredicted RBP20.2■□□□□ 0.82
COL7A1-209ENST00000474432 RPF1Q9H9Y2 349 aaKnown RBP20.2■□□□□ 0.82
COL7A1-209ENST00000474432 POLIQ9UNA4 740 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 ZFP37Q9Y6Q3 630 aaPredicted RBP20.2■□□□□ 0.82
COL7A1-209ENST00000474432 NUMBLQ9Y6R0 609 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 SCN1AP35498 2009 aa20.2■□□□□ 0.82
COL7A1-209ENST00000474432 H7C4K7 107 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 NRG2O14511 850 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-209ENST00000474432 VNN2O95498 520 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 CFHP08603 1231 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 ADSSP30520 456 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 NUBP1P53384 320 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 SLC5A9Q2M3M2 681 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 CTXN3Q4LDR2 81 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 JADE1Q6IE81 842 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 CRELD2Q6UXH1 353 aaPredicted RBP20.19■□□□□ 0.82
COL7A1-209ENST00000474432 LINC00301Q8NCQ3 95 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 PANK2Q9BZ23 570 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 WNT16Q9UBV4 365 aa20.19■□□□□ 0.82
COL7A1-209ENST00000474432 TSC2P49815 1807 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 SPTLC1O15269 473 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 GALR2O43603 387 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-209ENST00000474432 OAZ2O95190 189 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 NFICP08651 508 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 SRFP11831 508 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 ACOT2P49753 483 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 MRE11P49959 708 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 CASP5P51878 434 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 ARPP19P56211 112 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 PABPC1LQ4VXU2 614 aaKnown RBP20.18■□□□□ 0.82
COL7A1-209ENST00000474432 SV2BQ7L1I2 683 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 NPAS3Q8IXF0 933 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 SIX5Q8N196 739 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 TSPAN18Q96SJ8 248 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 FGFBP2Q9BYJ0 223 aa20.18■□□□□ 0.82
COL7A1-209ENST00000474432 AVENQ9NQS1 362 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-209ENST00000474432 TIMM13Q9Y5L4 95 aaPredicted RBP20.18■□□□□ 0.82
COL7A1-209ENST00000474432 FRMD3A2A2Y4 597 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 RHOP08100 348 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 AOC1P19801 751 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 ABCD1P33897 745 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 TPGS2Q68CL5 300 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 ZNF280DQ6N043 979 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 CD302Q8IX05 232 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 APPL2Q8NEU8 664 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 FLCNQ8NFG4 579 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 BEST2Q8NFU1 509 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 GPR152Q8TDT2 470 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 HVCN1Q96D96 273 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 SLC2A4RGQ9NR83 387 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 TFIP11Q9UBB9 837 aaKnown RBP20.17■□□□□ 0.82
COL7A1-209ENST00000474432 SEL1LQ9UBV2 794 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 KCNH3Q9ULD8 1083 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 INSL5Q9Y5Q6 135 aa20.17■□□□□ 0.82
COL7A1-209ENST00000474432 GTF3C5Q9Y5Q8 519 aaPredicted RBP20.17■□□□□ 0.82
COL7A1-209ENST00000474432 COL4A3Q01955 1670 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 ANO9A1A5B4 782 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 PIRO00625 290 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 WNT7BP56706 349 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 LILRA4P59901 499 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 PRSS36Q5K4E3 855 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 C9orf57Q5W0N0 161 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 ADALQ6DHV7 355 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 RNF19BQ6ZMZ0 732 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 CCDC73Q6ZRK6 1079 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 ZSWIM2Q8NEG5 633 aa20.16■□□□□ 0.82
COL7A1-209ENST00000474432 ING5Q8WYH8 240 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms