RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 FAM237AA0A1B0GTK4 181 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 A0A1B0GVL5 298 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 NRP1O14786 923 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 KRT18P05783 430 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 ARF4P18085 180 aaPredicted RBP13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 FSHRP23945 695 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 DMP1Q13316 513 aaPredicted RBP13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 PPP2R5DQ14738 602 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 AMHR2Q16671 573 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 PRR23BQ6ZRT6 265 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 TAS1R1Q7RTX1 841 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 PALB2Q86YC2 1186 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 ZBTB8OSQ8IWT0 167 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 HACE1Q8IYU2 909 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 KDF1Q8NAX2 398 aaPredicted RBP13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 SMG8Q8ND04 991 aaKnown RBP13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 PRIMPOLQ96LW4 560 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 FAM193BQ96PV7 902 aaPredicted RBP13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 HERC2P3Q9BVR0 1158 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 C2orf40Q9H1Z8 148 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 TNMDQ9H2S6 317 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 POLD4Q9HCU8 107 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 CDH7Q9ULB5 785 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 IPPQ9Y573 584 aa13.04□□□□□ -0.32
SQSTM1-206ENST00000466342 A0A1B0GUA9 196 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 MYMKA6NI61 221 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 C1QTNF9BB2RNN3 333 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 C1QTNF9P0C862 333 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 PLS3P13797 630 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 NPTX2P47972 431 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 GLUD2P49448 558 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 ZNF131P52739 623 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 LIMK1P53667 647 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 PEX3P56589 373 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 CACNB1Q02641 598 aaPredicted RBP13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 ADCY1Q08828 1119 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 FAM187BQ17R55 369 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 SLC27A1Q6PCB7 646 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 UNQ6494/PRO21346Q6UXR6 183 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 ZNF852Q6ZMS4 543 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 PPP4R3CPQ6ZMV5 832 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 FSIP1Q8NA03 581 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 DEPTORQ8TB45 409 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 DDX12PQ92771 950 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 CPB2Q96IY4 423 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 EIF2AQ9BY44 585 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 FZD8Q9H461 694 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 PRMT7Q9NVM4 692 aaPredicted RBP13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 KBTBD4Q9NVX7 518 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 KCNG1Q9UIX4 513 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 MRPS17Q9Y2R5 130 aaKnown RBP13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 GIT1Q9Y2X7 761 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 NOTCH4Q99466 2003 aa13.03□□□□□ -0.32
SQSTM1-206ENST00000466342 NBEAQ8NFP9 2946 aa13.02□□□□□ -0.32
SQSTM1-206ENST00000466342 ZFYVE26Q68DK2 2539 aa13.02□□□□□ -0.32
SQSTM1-206ENST00000466342 GOLGA6L4A6NEF3 574 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 CCDC169A6NNP5 214 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 SFI1A8K8P3 1242 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 TGM5O43548 720 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 TBCAO75347 108 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 FAM13AO94988 1023 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 EFEMP2O95967 443 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 SYKP43405 635 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 AFF1P51825 1210 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 NDUFA8P51970 172 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 DSG1Q02413 1049 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 SIM2Q14190 667 aaPredicted RBP13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 LILRA6Q6PI73 481 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 LRSAM1Q6UWE0 723 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 TPRG1Q6ZUI0 275 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 DYMQ7RTS9 669 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 RNF168Q8IYW5 571 aaPredicted RBP13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 CEP57L1Q8IYX8 460 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 SPIRE2Q8WWL2 714 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 NTPCRQ9BSD7 190 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 KIFC3Q9BVG8 833 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 TRIM6Q9C030 488 aaPredicted RBP13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 LRRC27Q9C0I9 530 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 CCDC113Q9H0I3 377 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 RNF39Q9H2S5 420 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 GOLPH3LQ9H4A5 285 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 PARVGQ9HBI0 331 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 KMT5AQ9NQR1 393 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 LARSQ9P2J5 1176 aaKnown RBP13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 USP25Q9UHP3 1055 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 PHLPP2Q6ZVD8 1323 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 CEP295Q9C0D2 2601 aa13.02□□□□□ -0.33
SQSTM1-206ENST00000466342 SETXQ7Z333 2677 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 ARL5CA6NH57 179 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 ACTN4O43707 911 aaKnown RBP13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 ZMYND10O75800 440 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 POMCP01189 267 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 SLFN14P0C7P3 912 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 EFNA5P52803 228 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 AMPD3Q01432 767 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 CLEC17AQ6ZS10 378 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 GRASPQ7Z6J2 395 aaPredicted RBP13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 FGF13Q92913 245 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 DNAJC19Q96DA6 116 aa13.01□□□□□ -0.33
SQSTM1-206ENST00000466342 GAD1Q99259 594 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms