RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 GJD3Q8N144 294 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 GPD1LQ8N335 351 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 TXLNBQ8N3L3 684 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 HELQQ8TDG4 1101 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 ASAP3Q8TDY4 903 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 PRPF31Q8WWY3 499 aaKnown RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 BAP1Q92560 729 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 EEF2KMTQ96G04 330 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 PRIMPOLQ96LW4 560 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 NLRP4Q96MN2 994 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 GCOM2Q9BZD3 368 aaPredicted RBP12.74□□□□□ -0.37
USP54-209ENST00000464635 CCDC113Q9H0I3 377 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 FZD8Q9H461 694 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 MMRN2Q9H8L6 949 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 CLEC1BQ9P126 229 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 PCDHB12Q9Y5F1 795 aa12.74□□□□□ -0.37
USP54-209ENST00000464635 ATP8B3O60423 1300 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 A0A0U1RQF3 1178 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 ZNF233A6NK53 670 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 MEIS3P2A8K0S8 358 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 ACKR2O00590 384 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 PER2O15055 1255 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 EXTL3O43909 919 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 NOL4O94818 638 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 LCA5LO95447 670 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 CCDC175P0C221 793 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 LAG3P18627 525 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 PON1P27169 355 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 CYLC1P35663 651 aaPredicted RBP12.73□□□□□ -0.37
USP54-209ENST00000464635 NDUFV1P49821 464 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 PTENP60484 403 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 LAMTOR4Q0VGL1 99 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 CAPSQ13938 189 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 SURF1Q15526 300 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 MAPK6Q16659 721 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 KLHDC7AQ5VTJ3 777 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 WDR59Q6PJI9 974 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 NYAP1Q6ZVC0 841 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 ZNF410Q86VK4 478 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 LRRC43Q8N309 656 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 VN1R2Q8NFZ6 395 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 PARD3BQ8TEW8 1205 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 LPPQ93052 612 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 TMEM143Q96AN5 459 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 MSLNLQ96KJ4 702 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 PCMTD1Q96MG8 357 aaPredicted RBP12.73□□□□□ -0.37
USP54-209ENST00000464635 CBWD1Q9BRT8 395 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 C1QTNF1Q9BXJ1 281 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 MRPL4Q9BYD3 311 aaKnown RBP12.73□□□□□ -0.37
USP54-209ENST00000464635 TLR9Q9NR96 1032 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 AAASQ9NRG9 546 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 AGPAT5Q9NUQ2 364 aa12.73□□□□□ -0.37
USP54-209ENST00000464635 RNF216Q9NWF9 866 aaPredicted RBP12.73□□□□□ -0.37
USP54-209ENST00000464635 BARX2Q9UMQ3 279 aaPredicted RBP12.73□□□□□ -0.37
USP54-209ENST00000464635 A0A0B4J269 797 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 EIF3CLB5ME19 914 aaKnown RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 RNF225M0QZC1 329 aaPredicted RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 FSCN2O14926 492 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 HNRNPDLO14979 420 aaKnown RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 HOXA2O43364 376 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 NCK2O43639 380 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 ZC3H11AO75152 810 aaKnown RBP eCLIP12.72□□□□□ -0.37
USP54-209ENST00000464635 TOM1L1O75674 476 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 GFPT2O94808 682 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 CCDC172P0C7W6 258 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 LIG4P49917 911 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 KRT83P78385 493 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 UBE3AQ05086 875 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 SMAD4Q13485 552 aaKnown RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 SMAD2Q15796 467 aaKnown RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 SNRNP35Q16560 246 aaKnown RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 PLPP4Q5VZY2 271 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 SLC39A4Q6P5W5 647 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 PDXDC1Q6P996 788 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 KCNT2Q6UVM3 1135 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 CACNA2D4Q7Z3S7 1137 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 SRGAP1Q7Z6B7 1085 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 ABI1Q8IZP0 508 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 EFHBQ8N7U6 833 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 EHBP1Q8NDI1 1231 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 MICAL1Q8TDZ2 1067 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 CPLX3Q8WVH0 158 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 POMGNT1Q8WZA1 660 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 EIF3CQ99613 913 aaKnown RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 LRFN3Q9BTN0 628 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 GANQ9H2C0 597 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 MINDY3Q9H8M7 445 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 IFT122Q9HBG6 1241 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 PRMT7Q9NVM4 692 aaPredicted RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 MYO1AQ9UBC5 1043 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 CD207Q9UJ71 328 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 PIN4Q9Y237 131 aaKnown RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 PAXBP1Q9Y5B6 917 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 ADGRG1Q9Y653 693 aa12.72□□□□□ -0.37
USP54-209ENST00000464635 EPN1Q9Y6I3 576 aaPredicted RBP12.72□□□□□ -0.37
USP54-209ENST00000464635 TDRD15B5MCY1 1934 aaKnown RBP12.71□□□□□ -0.37
USP54-209ENST00000464635 LRRIQ4A6NIV6 560 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 C19orf67A6NJJ6 358 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 ANKRD63C9JTQ0 380 aa12.71□□□□□ -0.37
USP54-209ENST00000464635 PI4K2BG5E9Z4 385 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms